Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.87■□□□□ 0.77
SKA1Q96BD8 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SKA1Q96BD8 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SKA1Q96BD8 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SKA1Q96BD8 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
SKA1Q96BD8 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC19.87■□□□□ 0.77
SKA1Q96BD8 AL355355.2-201ENST00000442321 338 ntBASIC19.87■□□□□ 0.77
SKA1Q96BD8 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SKA1Q96BD8 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC19.87■□□□□ 0.77
SKA1Q96BD8 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC19.87■□□□□ 0.77
SKA1Q96BD8 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
SKA1Q96BD8 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SKA1Q96BD8 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SKA1Q96BD8 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
SKA1Q96BD8 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
SKA1Q96BD8 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SKA1Q96BD8 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.87■□□□□ 0.77
SKA1Q96BD8 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SKA1Q96BD8 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
SKA1Q96BD8 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SKA1Q96BD8 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SKA1Q96BD8 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SKA1Q96BD8 NBPF21P-201ENST00000425093 1451 ntBASIC19.86■□□□□ 0.77
SKA1Q96BD8 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SKA1Q96BD8 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SKA1Q96BD8 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC19.86■□□□□ 0.77
SKA1Q96BD8 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SKA1Q96BD8 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC19.86■□□□□ 0.77
SKA1Q96BD8 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.86■□□□□ 0.77
SKA1Q96BD8 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SKA1Q96BD8 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SKA1Q96BD8 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SKA1Q96BD8 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SKA1Q96BD8 PENK-204ENST00000518770 863 ntTSL 2 BASIC19.86■□□□□ 0.77
SKA1Q96BD8 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC19.86■□□□□ 0.77
SKA1Q96BD8 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC19.86■□□□□ 0.77
SKA1Q96BD8 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SKA1Q96BD8 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC19.86■□□□□ 0.77
SKA1Q96BD8 SNX21-213ENST00000614929 587 ntTSL 5 BASIC19.86■□□□□ 0.77
SKA1Q96BD8 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SKA1Q96BD8 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.86■□□□□ 0.77
SKA1Q96BD8 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SKA1Q96BD8 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SKA1Q96BD8 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
SKA1Q96BD8 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.86■□□□□ 0.77
SKA1Q96BD8 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SKA1Q96BD8 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
SKA1Q96BD8 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SKA1Q96BD8 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
SKA1Q96BD8 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
SKA1Q96BD8 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
SKA1Q96BD8 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SKA1Q96BD8 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SKA1Q96BD8 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.85■□□□□ 0.77
SKA1Q96BD8 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SKA1Q96BD8 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SKA1Q96BD8 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SKA1Q96BD8 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
SKA1Q96BD8 TREX2-204ENST00000370212 861 ntTSL 5 BASIC19.85■□□□□ 0.77
SKA1Q96BD8 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
SKA1Q96BD8 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
SKA1Q96BD8 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
SKA1Q96BD8 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC19.85■□□□□ 0.77
SKA1Q96BD8 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC19.85■□□□□ 0.77
SKA1Q96BD8 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC19.85■□□□□ 0.77
SKA1Q96BD8 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC19.85■□□□□ 0.77
SKA1Q96BD8 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SKA1Q96BD8 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC19.85■□□□□ 0.77
SKA1Q96BD8 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC19.85■□□□□ 0.77
SKA1Q96BD8 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC19.85■□□□□ 0.77
SKA1Q96BD8 AC133561.5-201ENST00000635547 218 ntBASIC19.85■□□□□ 0.77
SKA1Q96BD8 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SKA1Q96BD8 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.85■□□□□ 0.77
SKA1Q96BD8 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.85■□□□□ 0.77
SKA1Q96BD8 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SKA1Q96BD8 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.85■□□□□ 0.77
SKA1Q96BD8 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SKA1Q96BD8 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SKA1Q96BD8 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SKA1Q96BD8 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.84■□□□□ 0.77
SKA1Q96BD8 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SKA1Q96BD8 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SKA1Q96BD8 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
SKA1Q96BD8 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SKA1Q96BD8 AC093484.2-201ENST00000580996 2166 ntBASIC19.84■□□□□ 0.77
SKA1Q96BD8 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.84■□□□□ 0.77
SKA1Q96BD8 HTR7P1-201ENST00000538670 1336 ntBASIC19.84■□□□□ 0.77
SKA1Q96BD8 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SKA1Q96BD8 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.84■□□□□ 0.77
SKA1Q96BD8 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SKA1Q96BD8 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC19.84■□□□□ 0.77
SKA1Q96BD8 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SKA1Q96BD8 MIR1224-201ENST00000408193 85 ntBASIC19.84■□□□□ 0.77
SKA1Q96BD8 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC19.84■□□□□ 0.77
SKA1Q96BD8 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SKA1Q96BD8 AC026471.5-201ENST00000615068 467 ntBASIC19.84■□□□□ 0.77
SKA1Q96BD8 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SKA1Q96BD8 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SKA1Q96BD8 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.84■□□□□ 0.77
SKA1Q96BD8 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms