Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC25.32■■□□□ 1.64
RTF1Q92541 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
RTF1Q92541 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
RTF1Q92541 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
RTF1Q92541 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC25.31■■□□□ 1.64
RTF1Q92541 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC25.31■■□□□ 1.64
RTF1Q92541 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC25.31■■□□□ 1.64
RTF1Q92541 DUT-205ENST00000558813 769 ntTSL 2 BASIC25.31■■□□□ 1.64
RTF1Q92541 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC25.31■■□□□ 1.64
RTF1Q92541 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
RTF1Q92541 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC25.31■■□□□ 1.64
RTF1Q92541 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
RTF1Q92541 AC096733.2-201ENST00000609937 1394 ntBASIC25.31■■□□□ 1.64
RTF1Q92541 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
RTF1Q92541 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
RTF1Q92541 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
RTF1Q92541 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
RTF1Q92541 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC25.3■■□□□ 1.64
RTF1Q92541 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
RTF1Q92541 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC25.3■■□□□ 1.64
RTF1Q92541 TMA16-209ENST00000513272 803 ntTSL 2 BASIC25.3■■□□□ 1.64
RTF1Q92541 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
RTF1Q92541 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC25.3■■□□□ 1.64
RTF1Q92541 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC25.3■■□□□ 1.64
RTF1Q92541 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC25.3■■□□□ 1.64
RTF1Q92541 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC25.3■■□□□ 1.64
RTF1Q92541 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
RTF1Q92541 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC25.29■■□□□ 1.64
RTF1Q92541 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
RTF1Q92541 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
RTF1Q92541 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC25.29■■□□□ 1.64
RTF1Q92541 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
RTF1Q92541 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC25.29■■□□□ 1.64
RTF1Q92541 EGLN1P1-201ENST00000531623 762 ntBASIC25.29■■□□□ 1.64
RTF1Q92541 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC25.29■■□□□ 1.64
RTF1Q92541 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
RTF1Q92541 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC25.29■■□□□ 1.64
RTF1Q92541 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
RTF1Q92541 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC25.29■■□□□ 1.64
RTF1Q92541 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC25.28■■□□□ 1.64
RTF1Q92541 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
RTF1Q92541 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
RTF1Q92541 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC25.28■■□□□ 1.64
RTF1Q92541 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
RTF1Q92541 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC25.28■■□□□ 1.64
RTF1Q92541 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC25.28■■□□□ 1.64
RTF1Q92541 TSPY14P-201ENST00000303979 915 ntBASIC25.28■■□□□ 1.64
RTF1Q92541 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC25.28■■□□□ 1.64
RTF1Q92541 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC25.28■■□□□ 1.64
RTF1Q92541 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC25.28■■□□□ 1.64
RTF1Q92541 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC25.28■■□□□ 1.64
RTF1Q92541 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
RTF1Q92541 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
RTF1Q92541 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC25.28■■□□□ 1.64
RTF1Q92541 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC25.28■■□□□ 1.64
RTF1Q92541 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
RTF1Q92541 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
RTF1Q92541 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC25.27■■□□□ 1.64
RTF1Q92541 KRT8P41-201ENST00000533985 1514 ntBASIC25.27■■□□□ 1.64
RTF1Q92541 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC25.27■■□□□ 1.64
RTF1Q92541 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
RTF1Q92541 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC25.27■■□□□ 1.64
RTF1Q92541 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
RTF1Q92541 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
RTF1Q92541 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC25.27■■□□□ 1.64
RTF1Q92541 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC25.27■■□□□ 1.64
RTF1Q92541 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC25.27■■□□□ 1.64
RTF1Q92541 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC25.27■■□□□ 1.64
RTF1Q92541 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC25.27■■□□□ 1.64
RTF1Q92541 CLN6-221ENST00000637494 765 ntTSL 5 BASIC25.27■■□□□ 1.64
RTF1Q92541 MED17-221ENST00000639724 2317 ntTSL 5 BASIC25.27■■□□□ 1.64
RTF1Q92541 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC25.27■■□□□ 1.64
RTF1Q92541 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC25.27■■□□□ 1.64
RTF1Q92541 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC25.27■■□□□ 1.64
RTF1Q92541 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC25.27■■□□□ 1.64
RTF1Q92541 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
RTF1Q92541 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
RTF1Q92541 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
RTF1Q92541 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
RTF1Q92541 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC25.26■■□□□ 1.63
RTF1Q92541 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
RTF1Q92541 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
RTF1Q92541 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC25.26■■□□□ 1.63
RTF1Q92541 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC25.26■■□□□ 1.63
RTF1Q92541 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC25.26■■□□□ 1.63
RTF1Q92541 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
RTF1Q92541 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
RTF1Q92541 AC005521.1-201ENST00000393351 872 ntBASIC25.26■■□□□ 1.63
RTF1Q92541 MIR1224-201ENST00000408193 85 ntBASIC25.26■■□□□ 1.63
RTF1Q92541 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
RTF1Q92541 AC113347.1-201ENST00000413321 391 ntBASIC25.26■■□□□ 1.63
RTF1Q92541 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
RTF1Q92541 TK2-213ENST00000563369 882 ntTSL 5 BASIC25.26■■□□□ 1.63
RTF1Q92541 P4HB-223ENST00000576390 439 ntTSL 4 BASIC25.26■■□□□ 1.63
RTF1Q92541 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC25.26■■□□□ 1.63
RTF1Q92541 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC25.26■■□□□ 1.63
RTF1Q92541 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
RTF1Q92541 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
RTF1Q92541 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC25.26■■□□□ 1.63
RTF1Q92541 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms