Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC15.48■□□□□ 0.07
CLRN3Q8NCR9 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC15.48■□□□□ 0.07
CLRN3Q8NCR9 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CLRN3Q8NCR9 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
CLRN3Q8NCR9 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN3Q8NCR9 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN3Q8NCR9 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN3Q8NCR9 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN3Q8NCR9 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN3Q8NCR9 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC15.47■□□□□ 0.07
CLRN3Q8NCR9 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN3Q8NCR9 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN3Q8NCR9 IDNK-201ENST00000376417 511 ntTSL 5 BASIC15.47■□□□□ 0.07
CLRN3Q8NCR9 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN3Q8NCR9 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN3Q8NCR9 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN3Q8NCR9 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC15.47■□□□□ 0.07
CLRN3Q8NCR9 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC15.47■□□□□ 0.07
CLRN3Q8NCR9 AC068587.7-201ENST00000641602 218 ntBASIC15.47■□□□□ 0.07
CLRN3Q8NCR9 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN3Q8NCR9 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN3Q8NCR9 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
CLRN3Q8NCR9 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
CLRN3Q8NCR9 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC15.47■□□□□ 0.07
CLRN3Q8NCR9 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC15.47■□□□□ 0.07
CLRN3Q8NCR9 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
CLRN3Q8NCR9 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC15.47■□□□□ 0.07
CLRN3Q8NCR9 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN3Q8NCR9 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
CLRN3Q8NCR9 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN3Q8NCR9 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC15.47■□□□□ 0.07
CLRN3Q8NCR9 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN3Q8NCR9 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN3Q8NCR9 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CLRN3Q8NCR9 AL031598.1-201ENST00000561511 1773 ntBASIC15.47■□□□□ 0.07
CLRN3Q8NCR9 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 PKD1P1-201ENST00000458669 6805 ntBASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CLRN3Q8NCR9 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
CLRN3Q8NCR9 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
CLRN3Q8NCR9 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
CLRN3Q8NCR9 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC15.46■□□□□ 0.06
CLRN3Q8NCR9 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.06
CLRN3Q8NCR9 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
CLRN3Q8NCR9 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC15.46■□□□□ 0.06
CLRN3Q8NCR9 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC15.46■□□□□ 0.06
CLRN3Q8NCR9 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 MADD-208ENST00000405573 1823 ntTSL 5 BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
CLRN3Q8NCR9 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms