Protein–RNA interactions for Protein: Q8N609

TRAM1L1, Translocating chain-associated membrane protein 1-like 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAM1L1Q8N609 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAM1L1Q8N609 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRAM1L1Q8N609 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRAM1L1Q8N609 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRAM1L1Q8N609 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.19■□□□□ 0.66
TRAM1L1Q8N609 LINC01465-201ENST00000408887 1940 ntBASIC19.19■□□□□ 0.66
TRAM1L1Q8N609 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAM1L1Q8N609 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAM1L1Q8N609 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
TRAM1L1Q8N609 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRAM1L1Q8N609 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.19■□□□□ 0.66
TRAM1L1Q8N609 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAM1L1Q8N609 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAM1L1Q8N609 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAM1L1Q8N609 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRAM1L1Q8N609 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.19■□□□□ 0.66
TRAM1L1Q8N609 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
TRAM1L1Q8N609 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC19.19■□□□□ 0.66
TRAM1L1Q8N609 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.19■□□□□ 0.66
TRAM1L1Q8N609 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAM1L1Q8N609 KRT17P2-201ENST00000300992 1314 ntBASIC19.19■□□□□ 0.66
TRAM1L1Q8N609 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRAM1L1Q8N609 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.19■□□□□ 0.66
TRAM1L1Q8N609 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRAM1L1Q8N609 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.18■□□□□ 0.66
TRAM1L1Q8N609 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.18■□□□□ 0.66
TRAM1L1Q8N609 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.18■□□□□ 0.66
TRAM1L1Q8N609 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAM1L1Q8N609 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAM1L1Q8N609 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRAM1L1Q8N609 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC19.18■□□□□ 0.66
TRAM1L1Q8N609 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRAM1L1Q8N609 Z85996.1-201ENST00000494644 937 ntBASIC19.18■□□□□ 0.66
TRAM1L1Q8N609 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC19.18■□□□□ 0.66
TRAM1L1Q8N609 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.18■□□□□ 0.66
TRAM1L1Q8N609 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.18■□□□□ 0.66
TRAM1L1Q8N609 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
TRAM1L1Q8N609 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAM1L1Q8N609 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAM1L1Q8N609 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRAM1L1Q8N609 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRAM1L1Q8N609 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRAM1L1Q8N609 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAM1L1Q8N609 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC19.17■□□□□ 0.66
TRAM1L1Q8N609 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRAM1L1Q8N609 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAM1L1Q8N609 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
TRAM1L1Q8N609 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
TRAM1L1Q8N609 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAM1L1Q8N609 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAM1L1Q8N609 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAM1L1Q8N609 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
TRAM1L1Q8N609 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAM1L1Q8N609 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRAM1L1Q8N609 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAM1L1Q8N609 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRAM1L1Q8N609 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRAM1L1Q8N609 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC19.17■□□□□ 0.66
TRAM1L1Q8N609 AC116562.2-201ENST00000507042 360 ntBASIC19.17■□□□□ 0.66
TRAM1L1Q8N609 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19.17■□□□□ 0.66
TRAM1L1Q8N609 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.17■□□□□ 0.66
TRAM1L1Q8N609 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC19.17■□□□□ 0.66
TRAM1L1Q8N609 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC19.17■□□□□ 0.66
TRAM1L1Q8N609 DECR2-212ENST00000627716 352 ntTSL 2 BASIC19.17■□□□□ 0.66
TRAM1L1Q8N609 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.17■□□□□ 0.66
TRAM1L1Q8N609 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
TRAM1L1Q8N609 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAM1L1Q8N609 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
TRAM1L1Q8N609 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.17■□□□□ 0.66
TRAM1L1Q8N609 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
TRAM1L1Q8N609 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
TRAM1L1Q8N609 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRAM1L1Q8N609 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.16■□□□□ 0.66
TRAM1L1Q8N609 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAM1L1Q8N609 FSCN1P1-201ENST00000568912 1481 ntBASIC19.16■□□□□ 0.66
TRAM1L1Q8N609 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.16■□□□□ 0.66
TRAM1L1Q8N609 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAM1L1Q8N609 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAM1L1Q8N609 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.16■□□□□ 0.66
TRAM1L1Q8N609 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.16■□□□□ 0.66
TRAM1L1Q8N609 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAM1L1Q8N609 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC19.16■□□□□ 0.66
TRAM1L1Q8N609 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC19.16■□□□□ 0.66
TRAM1L1Q8N609 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC19.16■□□□□ 0.66
TRAM1L1Q8N609 AP003071.4-201ENST00000562276 1284 ntBASIC19.16■□□□□ 0.66
TRAM1L1Q8N609 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAM1L1Q8N609 MIR6786-201ENST00000616843 113 ntBASIC19.16■□□□□ 0.66
TRAM1L1Q8N609 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.16■□□□□ 0.66
TRAM1L1Q8N609 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC19.16■□□□□ 0.66
TRAM1L1Q8N609 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
TRAM1L1Q8N609 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAM1L1Q8N609 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.16■□□□□ 0.66
TRAM1L1Q8N609 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAM1L1Q8N609 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
TRAM1L1Q8N609 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
TRAM1L1Q8N609 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAM1L1Q8N609 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRAM1L1Q8N609 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.16■□□□□ 0.66
TRAM1L1Q8N609 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAM1L1Q8N609 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms