Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC28AQ8IWP9 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 SNAI3-AS1-205ENST00000568633 2096 ntBASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 GATB-213ENST00000515812 1893 ntTSL 5 BASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 GUSBP5-201ENST00000418136 578 ntBASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 GRAMD4P7-201ENST00000578182 1232 ntBASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CCDC28AQ8IWP9 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28AQ8IWP9 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28AQ8IWP9 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28AQ8IWP9 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28AQ8IWP9 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28AQ8IWP9 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28AQ8IWP9 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.17■□□□□ 0.18
CCDC28AQ8IWP9 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28AQ8IWP9 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28AQ8IWP9 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28AQ8IWP9 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28AQ8IWP9 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.17■□□□□ 0.18
CCDC28AQ8IWP9 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28AQ8IWP9 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28AQ8IWP9 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC16.17■□□□□ 0.18
CCDC28AQ8IWP9 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC16.17■□□□□ 0.18
CCDC28AQ8IWP9 AL117332.1-201ENST00000622628 974 ntBASIC16.17■□□□□ 0.18
CCDC28AQ8IWP9 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28AQ8IWP9 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
CCDC28AQ8IWP9 H19-201ENST00000411754 1788 ntTSL 5 BASIC16.17■□□□□ 0.18
CCDC28AQ8IWP9 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28AQ8IWP9 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28AQ8IWP9 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28AQ8IWP9 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28AQ8IWP9 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28AQ8IWP9 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28AQ8IWP9 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC28AQ8IWP9 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28AQ8IWP9 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28AQ8IWP9 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28AQ8IWP9 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28AQ8IWP9 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
CCDC28AQ8IWP9 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC16.16■□□□□ 0.18
CCDC28AQ8IWP9 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28AQ8IWP9 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28AQ8IWP9 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28AQ8IWP9 AC135776.1-201ENST00000319817 2481 ntBASIC16.16■□□□□ 0.18
CCDC28AQ8IWP9 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28AQ8IWP9 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC16.16■□□□□ 0.18
CCDC28AQ8IWP9 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
CCDC28AQ8IWP9 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC16.16■□□□□ 0.18
CCDC28AQ8IWP9 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28AQ8IWP9 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28AQ8IWP9 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.16■□□□□ 0.18
CCDC28AQ8IWP9 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28AQ8IWP9 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
CCDC28AQ8IWP9 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28AQ8IWP9 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28AQ8IWP9 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
CCDC28AQ8IWP9 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
CCDC28AQ8IWP9 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28AQ8IWP9 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28AQ8IWP9 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28AQ8IWP9 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC28AQ8IWP9 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms