Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP39Q53GS9 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP39Q53GS9 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP39Q53GS9 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP39Q53GS9 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP39Q53GS9 AL121603.2-201ENST00000557373 2117 ntBASIC19.69■□□□□ 0.74
USP39Q53GS9 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP39Q53GS9 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC19.69■□□□□ 0.74
USP39Q53GS9 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
USP39Q53GS9 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP39Q53GS9 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC19.69■□□□□ 0.74
USP39Q53GS9 AC091076.1-201ENST00000610741 619 ntBASIC19.69■□□□□ 0.74
USP39Q53GS9 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
USP39Q53GS9 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP39Q53GS9 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP39Q53GS9 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP39Q53GS9 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP39Q53GS9 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.68■□□□□ 0.74
USP39Q53GS9 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.68■□□□□ 0.74
USP39Q53GS9 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP39Q53GS9 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USP39Q53GS9 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP39Q53GS9 AL162377.1-201ENST00000618844 1793 ntBASIC19.68■□□□□ 0.74
USP39Q53GS9 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
USP39Q53GS9 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.68■□□□□ 0.74
USP39Q53GS9 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
USP39Q53GS9 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USP39Q53GS9 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP39Q53GS9 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP39Q53GS9 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP39Q53GS9 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC19.68■□□□□ 0.74
USP39Q53GS9 HMGA1P5-201ENST00000412453 271 ntBASIC19.68■□□□□ 0.74
USP39Q53GS9 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
USP39Q53GS9 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP39Q53GS9 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC19.68■□□□□ 0.74
USP39Q53GS9 AP000692.2-201ENST00000608391 879 ntBASIC19.68■□□□□ 0.74
USP39Q53GS9 FAM87A-204ENST00000613235 858 ntBASIC19.68■□□□□ 0.74
USP39Q53GS9 AC130371.2-201ENST00000619443 611 ntBASIC19.68■□□□□ 0.74
USP39Q53GS9 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
USP39Q53GS9 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USP39Q53GS9 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USP39Q53GS9 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.68■□□□□ 0.74
USP39Q53GS9 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP39Q53GS9 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP39Q53GS9 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
USP39Q53GS9 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USP39Q53GS9 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USP39Q53GS9 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
USP39Q53GS9 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
USP39Q53GS9 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.67■□□□□ 0.74
USP39Q53GS9 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
USP39Q53GS9 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
USP39Q53GS9 MED25-212ENST00000618715 1467 ntTSL 5 BASIC19.67■□□□□ 0.74
USP39Q53GS9 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.67■□□□□ 0.74
USP39Q53GS9 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP39Q53GS9 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
USP39Q53GS9 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP39Q53GS9 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
USP39Q53GS9 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.67■□□□□ 0.74
USP39Q53GS9 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP39Q53GS9 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP39Q53GS9 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP39Q53GS9 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP39Q53GS9 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
USP39Q53GS9 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
USP39Q53GS9 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP39Q53GS9 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP39Q53GS9 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
USP39Q53GS9 AC063952.2-201ENST00000498792 1227 ntBASIC19.67■□□□□ 0.74
USP39Q53GS9 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC19.67■□□□□ 0.74
USP39Q53GS9 AC022616.7-201ENST00000525383 220 ntBASIC19.67■□□□□ 0.74
USP39Q53GS9 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP39Q53GS9 GPX4-207ENST00000589115 812 ntTSL 2 BASIC19.67■□□□□ 0.74
USP39Q53GS9 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
USP39Q53GS9 AC116562.4-202ENST00000641738 218 ntBASIC19.67■□□□□ 0.74
USP39Q53GS9 AL512408.1-201ENST00000569378 2000 ntBASIC19.67■□□□□ 0.74
USP39Q53GS9 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC19.67■□□□□ 0.74
USP39Q53GS9 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.67■□□□□ 0.74
USP39Q53GS9 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP39Q53GS9 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
USP39Q53GS9 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
USP39Q53GS9 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP39Q53GS9 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
USP39Q53GS9 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP39Q53GS9 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.67■□□□□ 0.74
USP39Q53GS9 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC19.67■□□□□ 0.74
USP39Q53GS9 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
USP39Q53GS9 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.67■□□□□ 0.74
USP39Q53GS9 AC018553.1-201ENST00000616682 1458 ntBASIC19.67■□□□□ 0.74
USP39Q53GS9 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP39Q53GS9 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
USP39Q53GS9 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP39Q53GS9 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.66■□□□□ 0.74
USP39Q53GS9 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC19.66■□□□□ 0.74
USP39Q53GS9 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP39Q53GS9 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.66■□□□□ 0.74
USP39Q53GS9 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
USP39Q53GS9 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC19.66■□□□□ 0.74
USP39Q53GS9 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.66■□□□□ 0.74
USP39Q53GS9 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms