Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.16■□□□□ 0.82
CDH6P55285 MMAB-206ENST00000540016 945 ntTSL 3 BASIC20.16■□□□□ 0.82
CDH6P55285 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CDH6P55285 AC069544.1-201ENST00000609399 999 ntBASIC20.16■□□□□ 0.82
CDH6P55285 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.16■□□□□ 0.82
CDH6P55285 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDH6P55285 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDH6P55285 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDH6P55285 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC20.16■□□□□ 0.82
CDH6P55285 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.16■□□□□ 0.82
CDH6P55285 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
CDH6P55285 AC018445.3-201ENST00000624177 1945 ntBASIC20.15■□□□□ 0.82
CDH6P55285 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CDH6P55285 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDH6P55285 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
CDH6P55285 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC20.15■□□□□ 0.82
CDH6P55285 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
CDH6P55285 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDH6P55285 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDH6P55285 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDH6P55285 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC20.15■□□□□ 0.82
CDH6P55285 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CDH6P55285 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.15■□□□□ 0.82
CDH6P55285 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.15■□□□□ 0.82
CDH6P55285 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC20.15■□□□□ 0.82
CDH6P55285 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CDH6P55285 AC233263.1-201ENST00000578059 224 ntBASIC20.15■□□□□ 0.82
CDH6P55285 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDH6P55285 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC20.15■□□□□ 0.82
CDH6P55285 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
CDH6P55285 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDH6P55285 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDH6P55285 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDH6P55285 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC20.15■□□□□ 0.82
CDH6P55285 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
CDH6P55285 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
CDH6P55285 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CDH6P55285 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CDH6P55285 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CDH6P55285 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC20.14■□□□□ 0.81
CDH6P55285 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CDH6P55285 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CDH6P55285 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CDH6P55285 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CDH6P55285 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CDH6P55285 ANKRD18DP-204ENST00000455355 1975 ntBASIC20.14■□□□□ 0.81
CDH6P55285 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
CDH6P55285 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CDH6P55285 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CDH6P55285 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CDH6P55285 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CDH6P55285 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CDH6P55285 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CDH6P55285 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CDH6P55285 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CDH6P55285 ESRRAP1-201ENST00000400596 1257 ntBASIC20.14■□□□□ 0.81
CDH6P55285 MTDHP1-201ENST00000605323 784 ntBASIC20.14■□□□□ 0.81
CDH6P55285 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CDH6P55285 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
CDH6P55285 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC20.14■□□□□ 0.81
CDH6P55285 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC20.14■□□□□ 0.81
CDH6P55285 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CDH6P55285 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC20.13■□□□□ 0.81
CDH6P55285 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
CDH6P55285 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDH6P55285 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
CDH6P55285 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CDH6P55285 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
CDH6P55285 NBPF21P-201ENST00000425093 1451 ntBASIC20.13■□□□□ 0.81
CDH6P55285 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDH6P55285 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC20.13■□□□□ 0.81
CDH6P55285 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDH6P55285 AP000974.1-201ENST00000623909 2387 ntBASIC20.13■□□□□ 0.81
CDH6P55285 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDH6P55285 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
CDH6P55285 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.13■□□□□ 0.81
CDH6P55285 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.13■□□□□ 0.81
CDH6P55285 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.13■□□□□ 0.81
CDH6P55285 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDH6P55285 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDH6P55285 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDH6P55285 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDH6P55285 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDH6P55285 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
CDH6P55285 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CDH6P55285 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
CDH6P55285 AC098818.2-201ENST00000564925 2320 ntBASIC20.13■□□□□ 0.81
CDH6P55285 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDH6P55285 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
CDH6P55285 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC20.12■□□□□ 0.81
CDH6P55285 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
CDH6P55285 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
CDH6P55285 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CDH6P55285 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CDH6P55285 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
CDH6P55285 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CDH6P55285 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CDH6P55285 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.12■□□□□ 0.81
CDH6P55285 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC20.12■□□□□ 0.81
CDH6P55285 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms