Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SOX3P41225 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.22■□□□□ 0.51
SOX3P41225 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SOX3P41225 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.22■□□□□ 0.51
SOX3P41225 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SOX3P41225 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.22■□□□□ 0.51
SOX3P41225 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SOX3P41225 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
SOX3P41225 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SOX3P41225 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SOX3P41225 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SOX3P41225 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.22■□□□□ 0.51
SOX3P41225 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SOX3P41225 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SOX3P41225 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.22■□□□□ 0.51
SOX3P41225 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.22■□□□□ 0.51
SOX3P41225 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SOX3P41225 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SOX3P41225 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SOX3P41225 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SOX3P41225 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.22■□□□□ 0.51
SOX3P41225 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.22■□□□□ 0.51
SOX3P41225 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SOX3P41225 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SOX3P41225 AC116351.2-201ENST00000606540 1585 ntBASIC18.21■□□□□ 0.51
SOX3P41225 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SOX3P41225 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SOX3P41225 AC018553.1-201ENST00000616682 1458 ntBASIC18.21■□□□□ 0.51
SOX3P41225 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SOX3P41225 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SOX3P41225 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.21■□□□□ 0.51
SOX3P41225 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SOX3P41225 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.21■□□□□ 0.51
SOX3P41225 PHGDH-210ENST00000641115 1638 ntBASIC18.21■□□□□ 0.51
SOX3P41225 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
SOX3P41225 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SOX3P41225 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SOX3P41225 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SOX3P41225 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
SOX3P41225 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
SOX3P41225 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.21■□□□□ 0.51
SOX3P41225 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.21■□□□□ 0.51
SOX3P41225 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
SOX3P41225 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.21■□□□□ 0.51
SOX3P41225 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SOX3P41225 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC18.21■□□□□ 0.51
SOX3P41225 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SOX3P41225 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.21■□□□□ 0.51
SOX3P41225 Z99916.2-201ENST00000604037 246 ntBASIC18.21■□□□□ 0.51
SOX3P41225 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.21■□□□□ 0.51
SOX3P41225 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SOX3P41225 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SOX3P41225 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.21■□□□□ 0.51
SOX3P41225 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SOX3P41225 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.21■□□□□ 0.51
SOX3P41225 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SOX3P41225 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.21■□□□□ 0.5
SOX3P41225 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SOX3P41225 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
SOX3P41225 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SOX3P41225 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SOX3P41225 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
SOX3P41225 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.2■□□□□ 0.5
SOX3P41225 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.2■□□□□ 0.5
SOX3P41225 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.2■□□□□ 0.5
SOX3P41225 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.2■□□□□ 0.5
SOX3P41225 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SOX3P41225 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SOX3P41225 MIR718-201ENST00000390190 70 ntBASIC18.2■□□□□ 0.5
SOX3P41225 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.2■□□□□ 0.5
SOX3P41225 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SOX3P41225 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SOX3P41225 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SOX3P41225 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
SOX3P41225 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC18.2■□□□□ 0.5
SOX3P41225 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.2■□□□□ 0.5
SOX3P41225 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
SOX3P41225 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
SOX3P41225 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SOX3P41225 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.2■□□□□ 0.5
SOX3P41225 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SOX3P41225 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
SOX3P41225 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
SOX3P41225 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SOX3P41225 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SOX3P41225 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SOX3P41225 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SOX3P41225 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
SOX3P41225 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SOX3P41225 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SOX3P41225 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.19■□□□□ 0.5
SOX3P41225 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
SOX3P41225 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
SOX3P41225 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SOX3P41225 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
SOX3P41225 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SOX3P41225 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
SOX3P41225 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SOX3P41225 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
SOX3P41225 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms