Protein–RNA interactions for Protein: P32297

CHRNA3, Neuronal acetylcholine receptor subunit alpha-3, humanhuman

Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3P32297 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHRNA3P32297 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHRNA3P32297 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CHRNA3P32297 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
CHRNA3P32297 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CHRNA3P32297 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHRNA3P32297 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHRNA3P32297 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHRNA3P32297 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC20.42■□□□□ 0.86
CHRNA3P32297 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
CHRNA3P32297 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHRNA3P32297 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHRNA3P32297 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHRNA3P32297 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHRNA3P32297 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHRNA3P32297 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHRNA3P32297 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHRNA3P32297 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHRNA3P32297 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
CHRNA3P32297 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHRNA3P32297 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CHRNA3P32297 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHRNA3P32297 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHRNA3P32297 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHRNA3P32297 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CHRNA3P32297 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC20.41■□□□□ 0.86
CHRNA3P32297 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
CHRNA3P32297 KRT17P3-201ENST00000420566 1262 ntBASIC20.41■□□□□ 0.86
CHRNA3P32297 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC20.41■□□□□ 0.86
CHRNA3P32297 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC20.41■□□□□ 0.86
CHRNA3P32297 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC20.41■□□□□ 0.86
CHRNA3P32297 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.41■□□□□ 0.86
CHRNA3P32297 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CHRNA3P32297 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
CHRNA3P32297 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHRNA3P32297 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC20.41■□□□□ 0.86
CHRNA3P32297 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.41■□□□□ 0.86
CHRNA3P32297 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHRNA3P32297 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC20.41■□□□□ 0.86
CHRNA3P32297 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
CHRNA3P32297 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHRNA3P32297 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHRNA3P32297 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC20.4■□□□□ 0.86
CHRNA3P32297 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHRNA3P32297 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHRNA3P32297 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
CHRNA3P32297 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHRNA3P32297 AL390719.1-204ENST00000412397 1219 ntBASIC20.4■□□□□ 0.86
CHRNA3P32297 AC098590.1-201ENST00000468126 897 ntBASIC20.4■□□□□ 0.86
CHRNA3P32297 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHRNA3P32297 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
CHRNA3P32297 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC20.4■□□□□ 0.86
CHRNA3P32297 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC20.4■□□□□ 0.86
CHRNA3P32297 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC20.4■□□□□ 0.86
CHRNA3P32297 AC006557.6-201ENST00000623071 864 ntBASIC20.4■□□□□ 0.86
CHRNA3P32297 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC20.4■□□□□ 0.86
CHRNA3P32297 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHRNA3P32297 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHRNA3P32297 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CHRNA3P32297 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CHRNA3P32297 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
CHRNA3P32297 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
CHRNA3P32297 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHRNA3P32297 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHRNA3P32297 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHRNA3P32297 MCC-208ENST00000514701 2855 ntTSL 2 BASIC20.39■□□□□ 0.85
CHRNA3P32297 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.39■□□□□ 0.85
CHRNA3P32297 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHRNA3P32297 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHRNA3P32297 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHRNA3P32297 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
CHRNA3P32297 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHRNA3P32297 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.39■□□□□ 0.85
CHRNA3P32297 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC20.39■□□□□ 0.85
CHRNA3P32297 AC023632.3-201ENST00000521633 145 ntBASIC20.39■□□□□ 0.85
CHRNA3P32297 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.39■□□□□ 0.85
CHRNA3P32297 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
CHRNA3P32297 AC066615.1-201ENST00000640911 628 ntBASIC20.39■□□□□ 0.85
CHRNA3P32297 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHRNA3P32297 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
CHRNA3P32297 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
CHRNA3P32297 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
CHRNA3P32297 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHRNA3P32297 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CHRNA3P32297 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHRNA3P32297 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC20.39■□□□□ 0.85
CHRNA3P32297 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
CHRNA3P32297 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC20.39■□□□□ 0.85
CHRNA3P32297 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC20.38■□□□□ 0.85
CHRNA3P32297 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC20.38■□□□□ 0.85
CHRNA3P32297 AC120498.9-201ENST00000339021 3867 ntBASIC20.38■□□□□ 0.85
CHRNA3P32297 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC20.38■□□□□ 0.85
CHRNA3P32297 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
CHRNA3P32297 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CHRNA3P32297 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.38■□□□□ 0.85
CHRNA3P32297 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CHRNA3P32297 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC20.38■□□□□ 0.85
CHRNA3P32297 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC20.38■□□□□ 0.85
CHRNA3P32297 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CHRNA3P32297 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms