Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC17.56■□□□□ 0.4
HOXD4P09016 PHGDH-210ENST00000641115 1638 ntBASIC17.56■□□□□ 0.4
HOXD4P09016 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
HOXD4P09016 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXD4P09016 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXD4P09016 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXD4P09016 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC17.56■□□□□ 0.4
HOXD4P09016 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HOXD4P09016 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.56■□□□□ 0.4
HOXD4P09016 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXD4P09016 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXD4P09016 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC17.56■□□□□ 0.4
HOXD4P09016 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC17.56■□□□□ 0.4
HOXD4P09016 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC17.56■□□□□ 0.4
HOXD4P09016 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HOXD4P09016 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC17.55■□□□□ 0.4
HOXD4P09016 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HOXD4P09016 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXD4P09016 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC17.55■□□□□ 0.4
HOXD4P09016 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HOXD4P09016 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC17.55■□□□□ 0.4
HOXD4P09016 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXD4P09016 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
HOXD4P09016 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
HOXD4P09016 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXD4P09016 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC17.55■□□□□ 0.4
HOXD4P09016 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
HOXD4P09016 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC17.55■□□□□ 0.4
HOXD4P09016 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXD4P09016 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17.55■□□□□ 0.4
HOXD4P09016 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC17.55■□□□□ 0.4
HOXD4P09016 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HOXD4P09016 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HOXD4P09016 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXD4P09016 PPP1R14BP5-201ENST00000440334 435 ntBASIC17.55■□□□□ 0.4
HOXD4P09016 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HOXD4P09016 AC131212.4-201ENST00000623606 975 ntBASIC17.55■□□□□ 0.4
HOXD4P09016 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXD4P09016 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXD4P09016 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXD4P09016 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC17.55■□□□□ 0.4
HOXD4P09016 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXD4P09016 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
HOXD4P09016 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC17.55■□□□□ 0.4
HOXD4P09016 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.55■□□□□ 0.4
HOXD4P09016 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXD4P09016 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
HOXD4P09016 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXD4P09016 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HOXD4P09016 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
HOXD4P09016 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HOXD4P09016 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
HOXD4P09016 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC17.54■□□□□ 0.4
HOXD4P09016 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC17.54■□□□□ 0.4
HOXD4P09016 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HOXD4P09016 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HOXD4P09016 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HOXD4P09016 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HOXD4P09016 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HOXD4P09016 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.54■□□□□ 0.4
HOXD4P09016 FITM1-202ENST00000559294 800 ntBASIC17.54■□□□□ 0.4
HOXD4P09016 AC145285.6-201ENST00000604632 637 ntBASIC17.54■□□□□ 0.4
HOXD4P09016 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC17.54■□□□□ 0.4
HOXD4P09016 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HOXD4P09016 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HOXD4P09016 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HOXD4P09016 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC17.53■□□□□ 0.4
HOXD4P09016 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HOXD4P09016 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC17.53■□□□□ 0.4
HOXD4P09016 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC17.53■□□□□ 0.4
HOXD4P09016 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HOXD4P09016 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
HOXD4P09016 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
HOXD4P09016 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HOXD4P09016 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
HOXD4P09016 AC079598.2-202ENST00000546624 1451 ntBASIC17.53■□□□□ 0.4
HOXD4P09016 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HOXD4P09016 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HOXD4P09016 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC17.53■□□□□ 0.4
HOXD4P09016 NT5C-211ENST00000582170 653 ntTSL 3 BASIC17.53■□□□□ 0.4
HOXD4P09016 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC17.53■□□□□ 0.4
HOXD4P09016 DGCR10-201ENST00000609839 495 ntBASIC17.53■□□□□ 0.4
HOXD4P09016 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.53■□□□□ 0.4
HOXD4P09016 AC092865.7-201ENST00000641832 219 ntBASIC17.53■□□□□ 0.4
HOXD4P09016 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HOXD4P09016 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HOXD4P09016 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HOXD4P09016 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
HOXD4P09016 AC005082.1-201ENST00000413042 2259 ntBASIC17.52■□□□□ 0.4
HOXD4P09016 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HOXD4P09016 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HOXD4P09016 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
HOXD4P09016 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC17.52■□□□□ 0.4
HOXD4P09016 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HOXD4P09016 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HOXD4P09016 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HOXD4P09016 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC17.52■□□□□ 0.4
HOXD4P09016 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.52■□□□□ 0.4
HOXD4P09016 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
HOXD4P09016 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms