Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TNFP01375 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
TNFP01375 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TNFP01375 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC18.94■□□□□ 0.62
TNFP01375 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TNFP01375 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TNFP01375 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.94■□□□□ 0.62
TNFP01375 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TNFP01375 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
TNFP01375 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TNFP01375 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
TNFP01375 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.93■□□□□ 0.62
TNFP01375 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
TNFP01375 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.93■□□□□ 0.62
TNFP01375 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
TNFP01375 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TNFP01375 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
TNFP01375 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
TNFP01375 SLC25A1P2-201ENST00000430693 912 ntBASIC18.93■□□□□ 0.62
TNFP01375 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.93■□□□□ 0.62
TNFP01375 AL049597.2-201ENST00000565575 961 ntBASIC18.93■□□□□ 0.62
TNFP01375 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TNFP01375 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC18.93■□□□□ 0.62
TNFP01375 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.93■□□□□ 0.62
TNFP01375 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TNFP01375 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
TNFP01375 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.93■□□□□ 0.62
TNFP01375 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TNFP01375 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.93■□□□□ 0.62
TNFP01375 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC18.93■□□□□ 0.62
TNFP01375 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
TNFP01375 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.92■□□□□ 0.62
TNFP01375 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
TNFP01375 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.92■□□□□ 0.62
TNFP01375 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TNFP01375 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
TNFP01375 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.92■□□□□ 0.62
TNFP01375 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
TNFP01375 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TNFP01375 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.92■□□□□ 0.62
TNFP01375 AL157384.1-201ENST00000445995 2473 ntBASIC18.92■□□□□ 0.62
TNFP01375 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
TNFP01375 KRT8P41-201ENST00000533985 1514 ntBASIC18.92■□□□□ 0.62
TNFP01375 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TNFP01375 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
TNFP01375 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
TNFP01375 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
TNFP01375 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.92■□□□□ 0.62
TNFP01375 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.92■□□□□ 0.62
TNFP01375 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.92■□□□□ 0.62
TNFP01375 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TNFP01375 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
TNFP01375 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.92■□□□□ 0.62
TNFP01375 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.92■□□□□ 0.62
TNFP01375 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.92■□□□□ 0.62
TNFP01375 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.92■□□□□ 0.62
TNFP01375 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.92■□□□□ 0.62
TNFP01375 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
TNFP01375 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TNFP01375 AC073508.3-201ENST00000619697 1419 ntBASIC18.91■□□□□ 0.62
TNFP01375 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TNFP01375 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TNFP01375 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
TNFP01375 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
TNFP01375 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TNFP01375 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
TNFP01375 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.91■□□□□ 0.62
TNFP01375 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TNFP01375 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.91■□□□□ 0.62
TNFP01375 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TNFP01375 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TNFP01375 INGX-201ENST00000359239 846 ntBASIC18.91■□□□□ 0.62
TNFP01375 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TNFP01375 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TNFP01375 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TNFP01375 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC18.91■□□□□ 0.62
TNFP01375 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC18.91■□□□□ 0.62
TNFP01375 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC18.91■□□□□ 0.62
TNFP01375 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC18.91■□□□□ 0.62
TNFP01375 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.91■□□□□ 0.62
TNFP01375 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
TNFP01375 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.91■□□□□ 0.62
TNFP01375 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TNFP01375 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.91■□□□□ 0.62
TNFP01375 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.91■□□□□ 0.62
TNFP01375 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TNFP01375 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TNFP01375 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TNFP01375 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.91■□□□□ 0.62
TNFP01375 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TNFP01375 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC18.91■□□□□ 0.62
TNFP01375 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TNFP01375 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TNFP01375 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
TNFP01375 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.9■□□□□ 0.62
TNFP01375 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
TNFP01375 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
TNFP01375 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TNFP01375 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TNFP01375 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms