Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VPS4BO75351 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS4BO75351 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VPS4BO75351 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC18.99■□□□□ 0.63
VPS4BO75351 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VPS4BO75351 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS4BO75351 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
VPS4BO75351 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS4BO75351 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VPS4BO75351 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS4BO75351 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.98■□□□□ 0.63
VPS4BO75351 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS4BO75351 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS4BO75351 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS4BO75351 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS4BO75351 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.98■□□□□ 0.63
VPS4BO75351 AC211429.1-201ENST00000415277 523 ntBASIC18.98■□□□□ 0.63
VPS4BO75351 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS4BO75351 KRT17P3-201ENST00000420566 1262 ntBASIC18.98■□□□□ 0.63
VPS4BO75351 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
VPS4BO75351 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.98■□□□□ 0.63
VPS4BO75351 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.98■□□□□ 0.63
VPS4BO75351 RPPH1-201ENST00000516869 333 ntBASIC18.98■□□□□ 0.63
VPS4BO75351 RNF121-214ENST00000533380 870 ntTSL 3 BASIC18.98■□□□□ 0.63
VPS4BO75351 C2orf69P4-201ENST00000565394 541 ntBASIC18.98■□□□□ 0.63
VPS4BO75351 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC18.98■□□□□ 0.63
VPS4BO75351 AL589743.5-201ENST00000616611 1050 ntBASIC18.98■□□□□ 0.63
VPS4BO75351 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS4BO75351 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC18.98■□□□□ 0.63
VPS4BO75351 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS4BO75351 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.98■□□□□ 0.63
VPS4BO75351 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.98■□□□□ 0.63
VPS4BO75351 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VPS4BO75351 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.98■□□□□ 0.63
VPS4BO75351 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS4BO75351 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.98■□□□□ 0.63
VPS4BO75351 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VPS4BO75351 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS4BO75351 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS4BO75351 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS4BO75351 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.97■□□□□ 0.63
VPS4BO75351 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS4BO75351 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS4BO75351 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VPS4BO75351 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.97■□□□□ 0.63
VPS4BO75351 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
VPS4BO75351 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
VPS4BO75351 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VPS4BO75351 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.97■□□□□ 0.63
VPS4BO75351 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS4BO75351 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC18.97■□□□□ 0.63
VPS4BO75351 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.97■□□□□ 0.63
VPS4BO75351 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.97■□□□□ 0.63
VPS4BO75351 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC18.97■□□□□ 0.63
VPS4BO75351 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC18.97■□□□□ 0.63
VPS4BO75351 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
VPS4BO75351 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
VPS4BO75351 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC18.97■□□□□ 0.63
VPS4BO75351 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS4BO75351 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS4BO75351 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.97■□□□□ 0.63
VPS4BO75351 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS4BO75351 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS4BO75351 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS4BO75351 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
VPS4BO75351 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VPS4BO75351 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS4BO75351 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS4BO75351 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
VPS4BO75351 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS4BO75351 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
VPS4BO75351 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC18.97■□□□□ 0.63
VPS4BO75351 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.96■□□□□ 0.63
VPS4BO75351 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS4BO75351 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.96■□□□□ 0.63
VPS4BO75351 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
VPS4BO75351 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS4BO75351 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.96■□□□□ 0.63
VPS4BO75351 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
VPS4BO75351 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS4BO75351 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC18.96■□□□□ 0.63
VPS4BO75351 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS4BO75351 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS4BO75351 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
VPS4BO75351 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.96■□□□□ 0.63
VPS4BO75351 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
VPS4BO75351 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
VPS4BO75351 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.96■□□□□ 0.63
VPS4BO75351 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.96■□□□□ 0.63
VPS4BO75351 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC18.96■□□□□ 0.63
VPS4BO75351 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
VPS4BO75351 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC18.96■□□□□ 0.63
VPS4BO75351 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC18.96■□□□□ 0.63
VPS4BO75351 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS4BO75351 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS4BO75351 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
VPS4BO75351 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4BO75351 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4BO75351 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
VPS4BO75351 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms