Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LDB2O43679 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.4■□□□□ 0.7
LDB2O43679 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LDB2O43679 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LDB2O43679 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC19.4■□□□□ 0.7
LDB2O43679 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
LDB2O43679 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
LDB2O43679 LINC01465-201ENST00000408887 1940 ntBASIC19.39■□□□□ 0.7
LDB2O43679 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
LDB2O43679 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.39■□□□□ 0.7
LDB2O43679 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC19.39■□□□□ 0.69
LDB2O43679 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
LDB2O43679 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LDB2O43679 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LDB2O43679 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LDB2O43679 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC19.39■□□□□ 0.69
LDB2O43679 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
LDB2O43679 C1QBPP2-201ENST00000528754 825 ntBASIC19.39■□□□□ 0.69
LDB2O43679 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC19.39■□□□□ 0.69
LDB2O43679 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC19.39■□□□□ 0.69
LDB2O43679 HLA-A-209ENST00000638375 975 ntBASIC19.39■□□□□ 0.69
LDB2O43679 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LDB2O43679 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
LDB2O43679 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LDB2O43679 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LDB2O43679 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC19.39■□□□□ 0.69
LDB2O43679 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LDB2O43679 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LDB2O43679 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.39■□□□□ 0.69
LDB2O43679 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LDB2O43679 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.39■□□□□ 0.69
LDB2O43679 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.39■□□□□ 0.69
LDB2O43679 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.39■□□□□ 0.69
LDB2O43679 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
LDB2O43679 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LDB2O43679 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LDB2O43679 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LDB2O43679 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC19.38■□□□□ 0.69
LDB2O43679 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
LDB2O43679 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LDB2O43679 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LDB2O43679 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC19.38■□□□□ 0.69
LDB2O43679 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.38■□□□□ 0.69
LDB2O43679 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.38■□□□□ 0.69
LDB2O43679 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC19.38■□□□□ 0.69
LDB2O43679 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
LDB2O43679 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
LDB2O43679 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
LDB2O43679 RPPH1-201ENST00000516869 333 ntBASIC19.38■□□□□ 0.69
LDB2O43679 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LDB2O43679 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC19.38■□□□□ 0.69
LDB2O43679 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
LDB2O43679 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.38■□□□□ 0.69
LDB2O43679 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LDB2O43679 AC066615.1-201ENST00000640911 628 ntBASIC19.38■□□□□ 0.69
LDB2O43679 TEX21P-204ENST00000641479 1693 ntBASIC19.38■□□□□ 0.69
LDB2O43679 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LDB2O43679 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
LDB2O43679 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.38■□□□□ 0.69
LDB2O43679 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LDB2O43679 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LDB2O43679 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.37■□□□□ 0.69
LDB2O43679 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
LDB2O43679 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
LDB2O43679 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LDB2O43679 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.37■□□□□ 0.69
LDB2O43679 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LDB2O43679 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC19.37■□□□□ 0.69
LDB2O43679 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.37■□□□□ 0.69
LDB2O43679 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
LDB2O43679 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.37■□□□□ 0.69
LDB2O43679 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LDB2O43679 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LDB2O43679 RNF121-214ENST00000533380 870 ntTSL 3 BASIC19.37■□□□□ 0.69
LDB2O43679 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC19.37■□□□□ 0.69
LDB2O43679 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.37■□□□□ 0.69
LDB2O43679 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
LDB2O43679 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
LDB2O43679 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LDB2O43679 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LDB2O43679 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
LDB2O43679 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.36■□□□□ 0.69
LDB2O43679 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.36■□□□□ 0.69
LDB2O43679 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
LDB2O43679 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LDB2O43679 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LDB2O43679 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LDB2O43679 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC19.36■□□□□ 0.69
LDB2O43679 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
LDB2O43679 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LDB2O43679 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
LDB2O43679 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
LDB2O43679 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LDB2O43679 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC19.36■□□□□ 0.69
LDB2O43679 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LDB2O43679 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LDB2O43679 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC19.36■□□□□ 0.69
LDB2O43679 IRX5-204ENST00000560154 879 ntTSL 5 BASIC19.36■□□□□ 0.69
LDB2O43679 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
LDB2O43679 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms