Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
SGCEO43556 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SGCEO43556 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
SGCEO43556 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SGCEO43556 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC17.11■□□□□ 0.33
SGCEO43556 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.11■□□□□ 0.33
SGCEO43556 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.11■□□□□ 0.33
SGCEO43556 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.11■□□□□ 0.33
SGCEO43556 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
SGCEO43556 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SGCEO43556 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SGCEO43556 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
SGCEO43556 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC17.11■□□□□ 0.33
SGCEO43556 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SGCEO43556 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SGCEO43556 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SGCEO43556 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SGCEO43556 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC17.11■□□□□ 0.33
SGCEO43556 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC17.11■□□□□ 0.33
SGCEO43556 AP003097.1-201ENST00000530657 1135 ntBASIC17.11■□□□□ 0.33
SGCEO43556 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC17.11■□□□□ 0.33
SGCEO43556 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC17.11■□□□□ 0.33
SGCEO43556 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC17.11■□□□□ 0.33
SGCEO43556 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC17.11■□□□□ 0.33
SGCEO43556 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC17.11■□□□□ 0.33
SGCEO43556 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SGCEO43556 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC17.11■□□□□ 0.33
SGCEO43556 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SGCEO43556 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SGCEO43556 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC17.11■□□□□ 0.33
SGCEO43556 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
SGCEO43556 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
SGCEO43556 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC17.11■□□□□ 0.33
SGCEO43556 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SGCEO43556 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
SGCEO43556 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SGCEO43556 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
SGCEO43556 AC116562.4-201ENST00000641316 2276 ntBASIC17.1■□□□□ 0.33
SGCEO43556 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SGCEO43556 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SGCEO43556 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
SGCEO43556 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SGCEO43556 TREX2-204ENST00000370212 861 ntTSL 5 BASIC17.1■□□□□ 0.33
SGCEO43556 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
SGCEO43556 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SGCEO43556 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
SGCEO43556 YBX1P10-201ENST00000444752 975 ntBASIC17.1■□□□□ 0.33
SGCEO43556 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC17.1■□□□□ 0.33
SGCEO43556 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC17.1■□□□□ 0.33
SGCEO43556 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC17.1■□□□□ 0.33
SGCEO43556 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC17.1■□□□□ 0.33
SGCEO43556 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC17.1■□□□□ 0.33
SGCEO43556 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
SGCEO43556 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC17.1■□□□□ 0.33
SGCEO43556 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
SGCEO43556 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SGCEO43556 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC17.1■□□□□ 0.33
SGCEO43556 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.1■□□□□ 0.33
SGCEO43556 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SGCEO43556 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SGCEO43556 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SGCEO43556 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SGCEO43556 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
SGCEO43556 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
SGCEO43556 GOLGA6L3-201ENST00000507199 1679 ntBASIC17.1■□□□□ 0.33
SGCEO43556 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SGCEO43556 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC17.09■□□□□ 0.33
SGCEO43556 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SGCEO43556 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SGCEO43556 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
SGCEO43556 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC17.09■□□□□ 0.33
SGCEO43556 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SGCEO43556 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.09■□□□□ 0.33
SGCEO43556 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SGCEO43556 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SGCEO43556 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
SGCEO43556 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
SGCEO43556 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
SGCEO43556 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC17.09■□□□□ 0.33
SGCEO43556 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC17.09■□□□□ 0.33
SGCEO43556 AC008403.3-201ENST00000598924 454 ntBASIC17.09■□□□□ 0.33
SGCEO43556 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SGCEO43556 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC17.09■□□□□ 0.33
SGCEO43556 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SGCEO43556 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SGCEO43556 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
SGCEO43556 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SGCEO43556 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
SGCEO43556 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
SGCEO43556 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SGCEO43556 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.33
SGCEO43556 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SGCEO43556 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
SGCEO43556 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC17.08■□□□□ 0.33
SGCEO43556 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.33
SGCEO43556 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
SGCEO43556 AC093484.2-201ENST00000580996 2166 ntBASIC17.08■□□□□ 0.33
SGCEO43556 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC17.08■□□□□ 0.33
SGCEO43556 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SGCEO43556 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms