Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
CLDN3O15551 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC21.2■□□□□ 0.98
CLDN3O15551 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CLDN3O15551 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLDN3O15551 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC21.2■□□□□ 0.98
CLDN3O15551 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC21.19■□□□□ 0.98
CLDN3O15551 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC21.19■□□□□ 0.98
CLDN3O15551 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLDN3O15551 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CLDN3O15551 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC21.19■□□□□ 0.98
CLDN3O15551 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
CLDN3O15551 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLDN3O15551 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CLDN3O15551 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC21.19■□□□□ 0.98
CLDN3O15551 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CLDN3O15551 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLDN3O15551 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLDN3O15551 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
CLDN3O15551 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC21.19■□□□□ 0.98
CLDN3O15551 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC21.19■□□□□ 0.98
CLDN3O15551 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CLDN3O15551 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CLDN3O15551 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLDN3O15551 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
CLDN3O15551 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC21.19■□□□□ 0.98
CLDN3O15551 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC21.19■□□□□ 0.98
CLDN3O15551 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLDN3O15551 AC007952.6-201ENST00000573168 2673 ntBASIC21.19■□□□□ 0.98
CLDN3O15551 AC003957.1-201ENST00000625108 2673 ntBASIC21.19■□□□□ 0.98
CLDN3O15551 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLDN3O15551 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLDN3O15551 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
CLDN3O15551 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLDN3O15551 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLDN3O15551 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC21.18■□□□□ 0.98
CLDN3O15551 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLDN3O15551 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC21.18■□□□□ 0.98
CLDN3O15551 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLDN3O15551 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLDN3O15551 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC21.18■□□□□ 0.98
CLDN3O15551 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC21.18■□□□□ 0.98
CLDN3O15551 AC004980.1-204ENST00000429707 299 ntBASIC21.18■□□□□ 0.98
CLDN3O15551 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CLDN3O15551 NUDT16P1-203ENST00000513809 620 ntBASIC21.18■□□□□ 0.98
CLDN3O15551 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC21.18■□□□□ 0.98
CLDN3O15551 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
CLDN3O15551 AP003071.4-201ENST00000562276 1284 ntBASIC21.18■□□□□ 0.98
CLDN3O15551 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC21.18■□□□□ 0.98
CLDN3O15551 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
CLDN3O15551 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC21.18■□□□□ 0.98
CLDN3O15551 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLDN3O15551 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC21.18■□□□□ 0.98
CLDN3O15551 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLDN3O15551 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLDN3O15551 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLDN3O15551 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC21.18■□□□□ 0.98
CLDN3O15551 ANKRD18DP-204ENST00000455355 1975 ntBASIC21.17■□□□□ 0.98
CLDN3O15551 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CLDN3O15551 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLDN3O15551 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLDN3O15551 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CLDN3O15551 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC21.17■□□□□ 0.98
CLDN3O15551 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC21.17■□□□□ 0.98
CLDN3O15551 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
CLDN3O15551 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC21.17■□□□□ 0.98
CLDN3O15551 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC21.17■□□□□ 0.98
CLDN3O15551 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC21.17■□□□□ 0.98
CLDN3O15551 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLDN3O15551 ABBA01031674.1-201ENST00000635145 728 ntBASIC21.17■□□□□ 0.98
CLDN3O15551 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CLDN3O15551 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC21.17■□□□□ 0.98
CLDN3O15551 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
CLDN3O15551 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
CLDN3O15551 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
CLDN3O15551 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLDN3O15551 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC21.17■□□□□ 0.98
CLDN3O15551 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLDN3O15551 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
CLDN3O15551 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLDN3O15551 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC21.17■□□□□ 0.98
CLDN3O15551 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC21.17■□□□□ 0.98
CLDN3O15551 PWWP2AP1-201ENST00000429776 2273 ntBASIC21.17■□□□□ 0.98
CLDN3O15551 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC21.17■□□□□ 0.98
CLDN3O15551 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CLDN3O15551 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLDN3O15551 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
CLDN3O15551 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
CLDN3O15551 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC21.16■□□□□ 0.98
CLDN3O15551 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC21.16■□□□□ 0.98
CLDN3O15551 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLDN3O15551 TREX1-205ENST00000625293 1783 ntBASIC21.16■□□□□ 0.98
CLDN3O15551 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC21.16■□□□□ 0.98
CLDN3O15551 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
CLDN3O15551 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLDN3O15551 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC21.16■□□□□ 0.98
CLDN3O15551 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLDN3O15551 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CLDN3O15551 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC21.16■□□□□ 0.98
CLDN3O15551 AC026271.3-201ENST00000571884 352 ntBASIC21.16■□□□□ 0.98
CLDN3O15551 DECR2-212ENST00000627716 352 ntTSL 2 BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms