Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC24.41■■□□□ 1.5
NPHP1O15259 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
NPHP1O15259 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
NPHP1O15259 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC24.41■■□□□ 1.5
NPHP1O15259 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC24.41■■□□□ 1.5
NPHP1O15259 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
NPHP1O15259 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC24.41■■□□□ 1.5
NPHP1O15259 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC24.41■■□□□ 1.5
NPHP1O15259 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
NPHP1O15259 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC24.41■■□□□ 1.5
NPHP1O15259 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC24.41■■□□□ 1.5
NPHP1O15259 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC24.41■■□□□ 1.5
NPHP1O15259 AC093458.2-201ENST00000623150 629 ntBASIC24.41■■□□□ 1.5
NPHP1O15259 AL031432.5-201ENST00000641059 760 ntBASIC24.41■■□□□ 1.5
NPHP1O15259 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC24.41■■□□□ 1.5
NPHP1O15259 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
NPHP1O15259 AC092338.2-201ENST00000568827 1415 ntBASIC24.41■■□□□ 1.5
NPHP1O15259 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
NPHP1O15259 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
NPHP1O15259 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.5
NPHP1O15259 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
NPHP1O15259 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
NPHP1O15259 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC24.4■■□□□ 1.5
NPHP1O15259 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
NPHP1O15259 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
NPHP1O15259 GXYLT1P6-201ENST00000456472 1187 ntBASIC24.4■■□□□ 1.5
NPHP1O15259 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC24.4■■□□□ 1.5
NPHP1O15259 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC24.4■■□□□ 1.5
NPHP1O15259 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC24.4■■□□□ 1.5
NPHP1O15259 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC24.4■■□□□ 1.5
NPHP1O15259 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
NPHP1O15259 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
NPHP1O15259 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
NPHP1O15259 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
NPHP1O15259 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
NPHP1O15259 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
NPHP1O15259 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC24.39■■□□□ 1.5
NPHP1O15259 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.5
NPHP1O15259 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC24.39■■□□□ 1.5
NPHP1O15259 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC24.39■■□□□ 1.5
NPHP1O15259 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
NPHP1O15259 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
NPHP1O15259 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC24.39■■□□□ 1.49
NPHP1O15259 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.49
NPHP1O15259 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
NPHP1O15259 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
NPHP1O15259 PCED1CP-201ENST00000419887 785 ntBASIC24.39■■□□□ 1.49
NPHP1O15259 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.49
NPHP1O15259 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC24.39■■□□□ 1.49
NPHP1O15259 AL359075.1-203ENST00000462729 1002 ntBASIC24.39■■□□□ 1.49
NPHP1O15259 Z85996.1-201ENST00000494644 937 ntBASIC24.39■■□□□ 1.49
NPHP1O15259 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC24.39■■□□□ 1.49
NPHP1O15259 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC24.39■■□□□ 1.49
NPHP1O15259 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC24.39■■□□□ 1.49
NPHP1O15259 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC24.39■■□□□ 1.49
NPHP1O15259 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC24.39■■□□□ 1.49
NPHP1O15259 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC24.39■■□□□ 1.49
NPHP1O15259 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
NPHP1O15259 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC24.39■■□□□ 1.49
NPHP1O15259 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC24.39■■□□□ 1.49
NPHP1O15259 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
NPHP1O15259 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC24.39■■□□□ 1.49
NPHP1O15259 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
NPHP1O15259 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
NPHP1O15259 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
NPHP1O15259 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
NPHP1O15259 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
NPHP1O15259 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC24.38■■□□□ 1.49
NPHP1O15259 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC24.38■■□□□ 1.49
NPHP1O15259 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
NPHP1O15259 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
NPHP1O15259 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC24.38■■□□□ 1.49
NPHP1O15259 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
NPHP1O15259 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC24.38■■□□□ 1.49
NPHP1O15259 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC24.38■■□□□ 1.49
NPHP1O15259 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
NPHP1O15259 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
NPHP1O15259 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC24.38■■□□□ 1.49
NPHP1O15259 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC24.37■■□□□ 1.49
NPHP1O15259 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
NPHP1O15259 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC24.37■■□□□ 1.49
NPHP1O15259 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
NPHP1O15259 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
NPHP1O15259 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
NPHP1O15259 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
NPHP1O15259 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
NPHP1O15259 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC24.37■■□□□ 1.49
NPHP1O15259 AC009947.2-201ENST00000444014 672 ntBASIC24.37■■□□□ 1.49
NPHP1O15259 HOMER2P1-201ENST00000455653 964 ntBASIC24.37■■□□□ 1.49
NPHP1O15259 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC24.37■■□□□ 1.49
NPHP1O15259 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC24.37■■□□□ 1.49
NPHP1O15259 AL353719.1-201ENST00000566847 864 ntBASIC24.37■■□□□ 1.49
NPHP1O15259 AL160286.2-201ENST00000567150 934 ntBASIC24.37■■□□□ 1.49
NPHP1O15259 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC24.37■■□□□ 1.49
NPHP1O15259 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC24.37■■□□□ 1.49
NPHP1O15259 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC24.37■■□□□ 1.49
NPHP1O15259 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC24.37■■□□□ 1.49
NPHP1O15259 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
NPHP1O15259 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC24.37■■□□□ 1.49
NPHP1O15259 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC24.37■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms