Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 PTBP1P-201ENST00000554374 1601 ntBASIC14.18□□□□□ -0.14
SMKR1H3BMG3 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
SMKR1H3BMG3 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 AP000997.3-201ENST00000623333 2250 ntBASIC14.17□□□□□ -0.14
SMKR1H3BMG3 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 AP001160.3-201ENST00000601484 763 ntBASIC14.17□□□□□ -0.14
SMKR1H3BMG3 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 MIR6084-201ENST00000622012 110 ntBASIC14.17□□□□□ -0.14
SMKR1H3BMG3 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
SMKR1H3BMG3 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC14.16□□□□□ -0.14
SMKR1H3BMG3 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMKR1H3BMG3 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SMKR1H3BMG3 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMKR1H3BMG3 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMKR1H3BMG3 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
SMKR1H3BMG3 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMKR1H3BMG3 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC14.16□□□□□ -0.14
SMKR1H3BMG3 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC14.16□□□□□ -0.14
SMKR1H3BMG3 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SMKR1H3BMG3 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
SMKR1H3BMG3 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMKR1H3BMG3 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMKR1H3BMG3 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMKR1H3BMG3 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC14.16□□□□□ -0.14
SMKR1H3BMG3 PGM5P4-201ENST00000421970 445 ntBASIC14.16□□□□□ -0.14
SMKR1H3BMG3 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SMKR1H3BMG3 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC14.16□□□□□ -0.14
SMKR1H3BMG3 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMKR1H3BMG3 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SMKR1H3BMG3 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMKR1H3BMG3 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMKR1H3BMG3 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMKR1H3BMG3 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMKR1H3BMG3 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMKR1H3BMG3 TEX21P-204ENST00000641479 1693 ntBASIC14.16□□□□□ -0.14
SMKR1H3BMG3 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMKR1H3BMG3 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMKR1H3BMG3 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SMKR1H3BMG3 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC14.16□□□□□ -0.14
SMKR1H3BMG3 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SMKR1H3BMG3 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SMKR1H3BMG3 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 AC087633.2-202ENST00000565166 1439 ntBASIC14.15□□□□□ -0.14
SMKR1H3BMG3 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 OR6D1P-202ENST00000641007 5290 ntBASIC14.15□□□□□ -0.14
SMKR1H3BMG3 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC14.15□□□□□ -0.14
SMKR1H3BMG3 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms