Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.49■□□□□ 0.39
COL6A6A6NMZ7 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
COL6A6A6NMZ7 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC17.49■□□□□ 0.39
COL6A6A6NMZ7 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC17.49■□□□□ 0.39
COL6A6A6NMZ7 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL6A6A6NMZ7 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
COL6A6A6NMZ7 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC17.49■□□□□ 0.39
COL6A6A6NMZ7 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL6A6A6NMZ7 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL6A6A6NMZ7 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL6A6A6NMZ7 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL6A6A6NMZ7 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL6A6A6NMZ7 AC034232.1-201ENST00000506026 1064 ntBASIC17.49■□□□□ 0.39
COL6A6A6NMZ7 AL139424.1-201ENST00000607572 797 ntBASIC17.49■□□□□ 0.39
COL6A6A6NMZ7 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC17.49■□□□□ 0.39
COL6A6A6NMZ7 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL6A6A6NMZ7 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.49■□□□□ 0.39
COL6A6A6NMZ7 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL6A6A6NMZ7 AC093525.10-201ENST00000625130 1569 ntBASIC17.49■□□□□ 0.39
COL6A6A6NMZ7 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
COL6A6A6NMZ7 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL6A6A6NMZ7 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL6A6A6NMZ7 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL6A6A6NMZ7 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
COL6A6A6NMZ7 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL6A6A6NMZ7 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
COL6A6A6NMZ7 AC091304.2-201ENST00000564639 760 ntBASIC17.48■□□□□ 0.39
COL6A6A6NMZ7 AC011498.5-201ENST00000592027 486 ntBASIC17.48■□□□□ 0.39
COL6A6A6NMZ7 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL6A6A6NMZ7 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL6A6A6NMZ7 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL6A6A6NMZ7 AL024507.2-201ENST00000606070 2574 ntBASIC17.48■□□□□ 0.39
COL6A6A6NMZ7 PARN-205ENST00000539279 1557 ntTSL 2 BASIC17.48■□□□□ 0.39
COL6A6A6NMZ7 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL6A6A6NMZ7 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC17.47■□□□□ 0.39
COL6A6A6NMZ7 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A6A6NMZ7 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A6A6NMZ7 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC17.47■□□□□ 0.39
COL6A6A6NMZ7 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.47■□□□□ 0.39
COL6A6A6NMZ7 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.47■□□□□ 0.39
COL6A6A6NMZ7 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
COL6A6A6NMZ7 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC17.47■□□□□ 0.39
COL6A6A6NMZ7 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.47■□□□□ 0.39
COL6A6A6NMZ7 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A6A6NMZ7 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A6A6NMZ7 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A6A6NMZ7 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A6A6NMZ7 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC17.47■□□□□ 0.39
COL6A6A6NMZ7 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A6A6NMZ7 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A6A6NMZ7 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A6A6NMZ7 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A6A6NMZ7 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A6A6NMZ7 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A6A6NMZ7 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A6A6NMZ7 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A6A6NMZ7 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.47■□□□□ 0.39
COL6A6A6NMZ7 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
COL6A6A6NMZ7 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC17.47■□□□□ 0.39
COL6A6A6NMZ7 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC17.47■□□□□ 0.39
COL6A6A6NMZ7 AL773604.1-201ENST00000617417 272 ntBASIC17.47■□□□□ 0.39
COL6A6A6NMZ7 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC17.47■□□□□ 0.39
COL6A6A6NMZ7 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A6A6NMZ7 GALC-202ENST00000393568 2054 ntTSL 2 BASIC17.47■□□□□ 0.39
COL6A6A6NMZ7 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A6A6NMZ7 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC17.46■□□□□ 0.39
COL6A6A6NMZ7 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A6A6NMZ7 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A6A6NMZ7 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A6A6NMZ7 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC17.46■□□□□ 0.39
COL6A6A6NMZ7 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A6A6NMZ7 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A6A6NMZ7 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A6A6NMZ7 AC079776.4-201ENST00000511039 504 ntBASIC17.46■□□□□ 0.39
COL6A6A6NMZ7 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC17.46■□□□□ 0.39
COL6A6A6NMZ7 VPS51-217ENST00000639871 243 ntTSL 5 BASIC17.46■□□□□ 0.39
COL6A6A6NMZ7 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC17.46■□□□□ 0.39
COL6A6A6NMZ7 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A6A6NMZ7 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A6A6NMZ7 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.46■□□□□ 0.39
COL6A6A6NMZ7 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A6A6NMZ7 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A6A6NMZ7 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A6A6NMZ7 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A6A6NMZ7 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC17.46■□□□□ 0.39
COL6A6A6NMZ7 SLC25A1P1-201ENST00000528351 927 ntBASIC17.46■□□□□ 0.39
COL6A6A6NMZ7 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17.46■□□□□ 0.39
COL6A6A6NMZ7 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC17.46■□□□□ 0.39
COL6A6A6NMZ7 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A6A6NMZ7 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A6A6NMZ7 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A6A6NMZ7 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
COL6A6A6NMZ7 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC17.45■□□□□ 0.38
COL6A6A6NMZ7 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A6A6NMZ7 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.45■□□□□ 0.38
COL6A6A6NMZ7 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
COL6A6A6NMZ7 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A6A6NMZ7 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A6A6NMZ7 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC17.45■□□□□ 0.38
COL6A6A6NMZ7 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms