Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
TCRBV7S3A2A0A539 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC19.71■□□□□ 0.75
TCRBV7S3A2A0A539 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TCRBV7S3A2A0A539 AP006587.1-201ENST00000534129 1502 ntBASIC19.71■□□□□ 0.75
TCRBV7S3A2A0A539 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC19.71■□□□□ 0.75
TCRBV7S3A2A0A539 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TCRBV7S3A2A0A539 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
TCRBV7S3A2A0A539 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
TCRBV7S3A2A0A539 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TCRBV7S3A2A0A539 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC19.71■□□□□ 0.75
TCRBV7S3A2A0A539 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC19.71■□□□□ 0.75
TCRBV7S3A2A0A539 PNN-205ENST00000556530 601 ntTSL 2 BASIC19.71■□□□□ 0.75
TCRBV7S3A2A0A539 AC060766.5-201ENST00000590539 871 ntBASIC19.71■□□□□ 0.75
TCRBV7S3A2A0A539 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC19.71■□□□□ 0.75
TCRBV7S3A2A0A539 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC19.71■□□□□ 0.75
TCRBV7S3A2A0A539 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TCRBV7S3A2A0A539 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TCRBV7S3A2A0A539 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
TCRBV7S3A2A0A539 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TCRBV7S3A2A0A539 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TCRBV7S3A2A0A539 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TCRBV7S3A2A0A539 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TCRBV7S3A2A0A539 ANKRD18DP-204ENST00000455355 1975 ntBASIC19.7■□□□□ 0.74
TCRBV7S3A2A0A539 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.7■□□□□ 0.74
TCRBV7S3A2A0A539 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.7■□□□□ 0.74
TCRBV7S3A2A0A539 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC19.7■□□□□ 0.74
TCRBV7S3A2A0A539 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
TCRBV7S3A2A0A539 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
TCRBV7S3A2A0A539 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TCRBV7S3A2A0A539 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC19.7■□□□□ 0.74
TCRBV7S3A2A0A539 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC19.7■□□□□ 0.74
TCRBV7S3A2A0A539 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC19.7■□□□□ 0.74
TCRBV7S3A2A0A539 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC19.7■□□□□ 0.74
TCRBV7S3A2A0A539 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
TCRBV7S3A2A0A539 AC120498.8-201ENST00000614275 531 ntBASIC19.7■□□□□ 0.74
TCRBV7S3A2A0A539 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC19.7■□□□□ 0.74
TCRBV7S3A2A0A539 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
TCRBV7S3A2A0A539 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
TCRBV7S3A2A0A539 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.7■□□□□ 0.74
TCRBV7S3A2A0A539 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.7■□□□□ 0.74
TCRBV7S3A2A0A539 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TCRBV7S3A2A0A539 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TCRBV7S3A2A0A539 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TCRBV7S3A2A0A539 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
TCRBV7S3A2A0A539 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.7■□□□□ 0.74
TCRBV7S3A2A0A539 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TCRBV7S3A2A0A539 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.7■□□□□ 0.74
TCRBV7S3A2A0A539 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.7■□□□□ 0.74
TCRBV7S3A2A0A539 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
TCRBV7S3A2A0A539 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TCRBV7S3A2A0A539 AL138781.2-201ENST00000617896 1843 ntBASIC19.69■□□□□ 0.74
TCRBV7S3A2A0A539 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TCRBV7S3A2A0A539 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
TCRBV7S3A2A0A539 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.69■□□□□ 0.74
TCRBV7S3A2A0A539 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TCRBV7S3A2A0A539 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
TCRBV7S3A2A0A539 YBX1P10-201ENST00000444752 975 ntBASIC19.69■□□□□ 0.74
TCRBV7S3A2A0A539 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC19.69■□□□□ 0.74
TCRBV7S3A2A0A539 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC19.69■□□□□ 0.74
TCRBV7S3A2A0A539 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC19.69■□□□□ 0.74
TCRBV7S3A2A0A539 AL121906.2-201ENST00000621597 723 ntBASIC19.69■□□□□ 0.74
TCRBV7S3A2A0A539 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TCRBV7S3A2A0A539 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TCRBV7S3A2A0A539 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
TCRBV7S3A2A0A539 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.69■□□□□ 0.74
TCRBV7S3A2A0A539 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TCRBV7S3A2A0A539 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC19.69■□□□□ 0.74
TCRBV7S3A2A0A539 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TCRBV7S3A2A0A539 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TCRBV7S3A2A0A539 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
TCRBV7S3A2A0A539 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TCRBV7S3A2A0A539 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
TCRBV7S3A2A0A539 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.68■□□□□ 0.74
TCRBV7S3A2A0A539 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TCRBV7S3A2A0A539 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.68■□□□□ 0.74
TCRBV7S3A2A0A539 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TCRBV7S3A2A0A539 KRT8P8-201ENST00000434750 1448 ntBASIC19.68■□□□□ 0.74
TCRBV7S3A2A0A539 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
TCRBV7S3A2A0A539 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TCRBV7S3A2A0A539 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TCRBV7S3A2A0A539 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TCRBV7S3A2A0A539 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC19.68■□□□□ 0.74
TCRBV7S3A2A0A539 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TCRBV7S3A2A0A539 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TCRBV7S3A2A0A539 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TCRBV7S3A2A0A539 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC19.68■□□□□ 0.74
TCRBV7S3A2A0A539 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TCRBV7S3A2A0A539 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
TCRBV7S3A2A0A539 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TCRBV7S3A2A0A539 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TCRBV7S3A2A0A539 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC19.68■□□□□ 0.74
TCRBV7S3A2A0A539 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TCRBV7S3A2A0A539 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.68■□□□□ 0.74
TCRBV7S3A2A0A539 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.68■□□□□ 0.74
TCRBV7S3A2A0A539 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TCRBV7S3A2A0A539 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TCRBV7S3A2A0A539 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TCRBV7S3A2A0A539 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
TCRBV7S3A2A0A539 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TCRBV7S3A2A0A539 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms