Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 SNORA40.2-201ENST00000390847 128 ntBASIC5.76□□□□□ -1.49
NUP88Q99567 LRRC37BP1-201ENST00000398851 714 ntBASIC5.76□□□□□ -1.49
NUP88Q99567 AL590084.1-201ENST00000407885 387 ntBASIC5.76□□□□□ -1.49
NUP88Q99567 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC5.76□□□□□ -1.49
NUP88Q99567 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC5.76□□□□□ -1.49
NUP88Q99567 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC5.76□□□□□ -1.49
NUP88Q99567 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC5.76□□□□□ -1.49
NUP88Q99567 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC5.76□□□□□ -1.49
NUP88Q99567 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC5.76□□□□□ -1.49
NUP88Q99567 MTCO1P3-201ENST00000429327 192 ntBASIC5.76□□□□□ -1.49
NUP88Q99567 CYCSP24-201ENST00000445119 316 ntBASIC5.76□□□□□ -1.49
NUP88Q99567 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
NUP88Q99567 AC093166.2-201ENST00000455969 1017 ntBASIC5.76□□□□□ -1.49
NUP88Q99567 GYG1P1-201ENST00000460864 698 ntBASIC5.76□□□□□ -1.49
NUP88Q99567 AC034244.1-201ENST00000507687 207 ntBASIC5.76□□□□□ -1.49
NUP88Q99567 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC5.76□□□□□ -1.49
NUP88Q99567 MTATP6P15-201ENST00000527233 835 ntBASIC5.76□□□□□ -1.49
NUP88Q99567 AP001880.2-201ENST00000538233 448 ntBASIC5.76□□□□□ -1.49
NUP88Q99567 AC092747.2-201ENST00000545069 983 ntBASIC5.76□□□□□ -1.49
NUP88Q99567 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC5.76□□□□□ -1.49
NUP88Q99567 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
NUP88Q99567 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC5.76□□□□□ -1.49
NUP88Q99567 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC5.76□□□□□ -1.49
NUP88Q99567 BPTFP1-201ENST00000579209 492 ntBASIC5.76□□□□□ -1.49
NUP88Q99567 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC5.76□□□□□ -1.49
NUP88Q99567 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC5.76□□□□□ -1.49
NUP88Q99567 AC115085.1-201ENST00000588924 229 ntBASIC5.76□□□□□ -1.49
NUP88Q99567 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC5.76□□□□□ -1.49
NUP88Q99567 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC5.76□□□□□ -1.49
NUP88Q99567 AC068790.7-201ENST00000602347 528 ntBASIC5.76□□□□□ -1.49
NUP88Q99567 NTAN1P1-201ENST00000603150 646 ntBASIC5.76□□□□□ -1.49
NUP88Q99567 AP005137.2-201ENST00000609238 400 ntBASIC5.76□□□□□ -1.49
NUP88Q99567 AC018926.3-201ENST00000618841 406 ntBASIC5.76□□□□□ -1.49
NUP88Q99567 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
NUP88Q99567 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC5.76□□□□□ -1.49
NUP88Q99567 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC5.76□□□□□ -1.49
NUP88Q99567 AC063976.2-201ENST00000425667 3556 ntBASIC5.76□□□□□ -1.49
NUP88Q99567 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
NUP88Q99567 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
NUP88Q99567 TCP11X1-202ENST00000622971 1372 ntBASIC5.76□□□□□ -1.49
NUP88Q99567 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
NUP88Q99567 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC5.76□□□□□ -1.49
NUP88Q99567 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
NUP88Q99567 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.75□□□□□ -1.49
NUP88Q99567 DPY19L2P2-203ENST00000435536 1858 ntBASIC5.75□□□□□ -1.49
NUP88Q99567 AC093775.1-201ENST00000624154 1868 ntBASIC5.75□□□□□ -1.49
NUP88Q99567 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
NUP88Q99567 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
NUP88Q99567 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
NUP88Q99567 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
NUP88Q99567 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
NUP88Q99567 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.75□□□□□ -1.49
NUP88Q99567 AC119744.1-201ENST00000454746 1715 ntBASIC5.75□□□□□ -1.49
NUP88Q99567 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
NUP88Q99567 AC017079.1-201ENST00000333650 415 ntBASIC5.75□□□□□ -1.49
NUP88Q99567 CD2-201ENST00000369477 478 ntTSL 2 BASIC5.75□□□□□ -1.49
NUP88Q99567 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
NUP88Q99567 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC5.75□□□□□ -1.49
NUP88Q99567 COX6CP13-201ENST00000428703 226 ntBASIC5.75□□□□□ -1.49
NUP88Q99567 AC007559.1-201ENST00000428736 355 ntBASIC5.75□□□□□ -1.49
NUP88Q99567 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC5.75□□□□□ -1.49
NUP88Q99567 DYNLL1P7-201ENST00000429273 258 ntBASIC5.75□□□□□ -1.49
NUP88Q99567 MTATP6P26-201ENST00000445926 662 ntBASIC5.75□□□□□ -1.49
NUP88Q99567 AC233982.1-201ENST00000451247 436 ntBASIC5.75□□□□□ -1.49
NUP88Q99567 RPL21P6-201ENST00000479171 504 ntBASIC5.75□□□□□ -1.49
NUP88Q99567 AC004263.1-201ENST00000479327 332 ntBASIC5.75□□□□□ -1.49
NUP88Q99567 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC5.75□□□□□ -1.49
NUP88Q99567 AC093534.1-201ENST00000504977 132 ntBASIC5.75□□□□□ -1.49
NUP88Q99567 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
NUP88Q99567 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC5.75□□□□□ -1.49
NUP88Q99567 AC005351.1-201ENST00000511152 786 ntBASIC5.75□□□□□ -1.49
NUP88Q99567 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
NUP88Q99567 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
NUP88Q99567 AC023050.2-201ENST00000544968 387 ntBASIC5.75□□□□□ -1.49
NUP88Q99567 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC5.75□□□□□ -1.49
NUP88Q99567 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC5.75□□□□□ -1.49
NUP88Q99567 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC5.75□□□□□ -1.49
NUP88Q99567 AADACP1-206ENST00000561502 1193 ntBASIC5.75□□□□□ -1.49
NUP88Q99567 MYLK-221ENST00000583087 678 ntTSL 4 BASIC5.75□□□□□ -1.49
NUP88Q99567 RN7SL52P-201ENST00000584271 284 ntBASIC5.75□□□□□ -1.49
NUP88Q99567 ELOCP28-201ENST00000590044 317 ntBASIC5.75□□□□□ -1.49
NUP88Q99567 AC008745.1-201ENST00000604064 271 ntBASIC5.75□□□□□ -1.49
NUP88Q99567 RN7SL722P-201ENST00000617780 284 ntBASIC5.75□□□□□ -1.49
NUP88Q99567 RN7SL565P-201ENST00000618246 284 ntBASIC5.75□□□□□ -1.49
NUP88Q99567 Z99129.2-201ENST00000619967 314 ntBASIC5.75□□□□□ -1.49
NUP88Q99567 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC5.75□□□□□ -1.49
NUP88Q99567 AC079416.3-201ENST00000624479 549 ntBASIC5.75□□□□□ -1.49
NUP88Q99567 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC5.75□□□□□ -1.49
NUP88Q99567 MFSD8-245ENST00000641743 948 ntBASIC5.75□□□□□ -1.49
NUP88Q99567 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
NUP88Q99567 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
NUP88Q99567 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
NUP88Q99567 ECM1P2-201ENST00000503354 1577 ntBASIC5.75□□□□□ -1.49
NUP88Q99567 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
NUP88Q99567 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.75□□□□□ -1.49
NUP88Q99567 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
NUP88Q99567 MFSD8-216ENST00000641147 4009 ntBASIC5.74□□□□□ -1.49
NUP88Q99567 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
NUP88Q99567 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
NUP88Q99567 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 124 ms