Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC015871.5-202ENST00000623252 701 ntBASIC4.93□□□□□ -1.62
PTPN9P43378 OR1S1-201ENST00000624470 978 ntBASIC4.93□□□□□ -1.62
PTPN9P43378 GMFB-210ENST00000628554 639 ntTSL 4 BASIC4.93□□□□□ -1.62
PTPN9P43378 AL121594.5-201ENST00000631724 573 ntBASIC4.93□□□□□ -1.62
PTPN9P43378 BX649567.1-201ENST00000642071 1134 ntBASIC4.93□□□□□ -1.62
PTPN9P43378 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
PTPN9P43378 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
PTPN9P43378 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
PTPN9P43378 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
PTPN9P43378 AL355578.1-201ENST00000607405 1328 ntBASIC4.93□□□□□ -1.62
PTPN9P43378 AC005332.5-201ENST00000591222 2919 ntBASIC4.93□□□□□ -1.62
PTPN9P43378 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
PTPN9P43378 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
PTPN9P43378 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
PTPN9P43378 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
PTPN9P43378 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.92□□□□□ -1.62
PTPN9P43378 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.92□□□□□ -1.62
PTPN9P43378 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
PTPN9P43378 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
PTPN9P43378 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
PTPN9P43378 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
PTPN9P43378 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
PTPN9P43378 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
PTPN9P43378 RNU6-1339P-201ENST00000363574 91 ntBASIC4.92□□□□□ -1.62
PTPN9P43378 SNORA58B-201ENST00000364259 136 ntBASIC4.92□□□□□ -1.62
PTPN9P43378 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
PTPN9P43378 ADIG-201ENST00000373348 430 ntTSL 2 BASIC4.92□□□□□ -1.62
PTPN9P43378 MIR1271-201ENST00000408537 86 ntBASIC4.92□□□□□ -1.62
PTPN9P43378 AL591848.1-201ENST00000413092 322 ntBASIC4.92□□□□□ -1.62
PTPN9P43378 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
PTPN9P43378 SSR1P2-201ENST00000415208 787 ntBASIC4.92□□□□□ -1.62
PTPN9P43378 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.92□□□□□ -1.62
PTPN9P43378 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.92□□□□□ -1.62
PTPN9P43378 OR5AW1P-201ENST00000426334 1006 ntBASIC4.92□□□□□ -1.62
PTPN9P43378 FABP7P2-201ENST00000429946 379 ntBASIC4.92□□□□□ -1.62
PTPN9P43378 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC4.92□□□□□ -1.62
PTPN9P43378 AC005154.2-201ENST00000438110 379 ntBASIC4.92□□□□□ -1.62
PTPN9P43378 AL450263.2-201ENST00000439400 589 ntBASIC4.92□□□□□ -1.62
PTPN9P43378 TDGF1P1-201ENST00000445734 527 ntBASIC4.92□□□□□ -1.62
PTPN9P43378 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC4.92□□□□□ -1.62
PTPN9P43378 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC4.92□□□□□ -1.62
PTPN9P43378 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC4.92□□□□□ -1.62
PTPN9P43378 AC091685.2-201ENST00000454924 864 ntBASIC4.92□□□□□ -1.62
PTPN9P43378 AC092324.1-201ENST00000468671 324 ntBASIC4.92□□□□□ -1.62
PTPN9P43378 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC4.92□□□□□ -1.62
PTPN9P43378 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC4.92□□□□□ -1.62
PTPN9P43378 RPS27AP18-201ENST00000515536 459 ntBASIC4.92□□□□□ -1.62
PTPN9P43378 RN7SKP276-201ENST00000516242 268 ntBASIC4.92□□□□□ -1.62
PTPN9P43378 RNA5SP464-201ENST00000516251 108 ntBASIC4.92□□□□□ -1.62
PTPN9P43378 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC4.92□□□□□ -1.62
PTPN9P43378 AL110118.1-201ENST00000553543 400 ntBASIC4.92□□□□□ -1.62
PTPN9P43378 SULT1C2P2-201ENST00000562517 294 ntBASIC4.92□□□□□ -1.62
PTPN9P43378 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
PTPN9P43378 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC4.92□□□□□ -1.62
PTPN9P43378 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC4.92□□□□□ -1.62
PTPN9P43378 UBE2FP2-201ENST00000566646 462 ntBASIC4.92□□□□□ -1.62
PTPN9P43378 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC4.92□□□□□ -1.62
PTPN9P43378 CCDC58P3-201ENST00000590792 430 ntBASIC4.92□□□□□ -1.62
PTPN9P43378 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC4.92□□□□□ -1.62
PTPN9P43378 RNF138P2-201ENST00000603490 592 ntBASIC4.92□□□□□ -1.62
PTPN9P43378 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
PTPN9P43378 AL138478.1-201ENST00000612252 832 ntBASIC4.92□□□□□ -1.62
PTPN9P43378 AC010975.3-201ENST00000618727 978 ntBASIC4.92□□□□□ -1.62
PTPN9P43378 AL121895.2-201ENST00000619558 447 ntBASIC4.92□□□□□ -1.62
PTPN9P43378 AP000676.4-201ENST00000624659 623 ntBASIC4.92□□□□□ -1.62
PTPN9P43378 AC097655.1-201ENST00000635075 318 ntBASIC4.92□□□□□ -1.62
PTPN9P43378 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
PTPN9P43378 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
PTPN9P43378 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.92□□□□□ -1.62
PTPN9P43378 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.92□□□□□ -1.62
PTPN9P43378 MAPK10-263ENST00000641052 4307 ntBASIC4.92□□□□□ -1.62
PTPN9P43378 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.92□□□□□ -1.62
PTPN9P43378 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
PTPN9P43378 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.92□□□□□ -1.62
PTPN9P43378 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.92□□□□□ -1.62
PTPN9P43378 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
PTPN9P43378 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
PTPN9P43378 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.91□□□□□ -1.62
PTPN9P43378 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
PTPN9P43378 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
PTPN9P43378 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
PTPN9P43378 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.91□□□□□ -1.62
PTPN9P43378 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
PTPN9P43378 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
PTPN9P43378 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
PTPN9P43378 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
PTPN9P43378 RNU6-353P-201ENST00000364266 108 ntBASIC4.91□□□□□ -1.62
PTPN9P43378 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC4.91□□□□□ -1.62
PTPN9P43378 MIR550A3-201ENST00000390735 95 ntBASIC4.91□□□□□ -1.62
PTPN9P43378 Y_RNA.578-201ENST00000390903 88 ntBASIC4.91□□□□□ -1.62
PTPN9P43378 MCTS2P-201ENST00000394552 546 ntBASIC4.91□□□□□ -1.62
PTPN9P43378 AL080315.1-201ENST00000406055 466 ntBASIC4.91□□□□□ -1.62
PTPN9P43378 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC4.91□□□□□ -1.62
PTPN9P43378 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC4.91□□□□□ -1.62
PTPN9P43378 DNAJA1P1-201ENST00000425106 1187 ntBASIC4.91□□□□□ -1.62
PTPN9P43378 RPS27P18-201ENST00000431701 247 ntBASIC4.91□□□□□ -1.62
PTPN9P43378 AC008072.1-201ENST00000434254 824 ntBASIC4.91□□□□□ -1.62
PTPN9P43378 AC009263.1-201ENST00000441193 1239 ntBASIC4.91□□□□□ -1.62
PTPN9P43378 MTCYBP42-201ENST00000444653 1130 ntBASIC4.91□□□□□ -1.62
PTPN9P43378 HMGB3P6-201ENST00000444896 598 ntBASIC4.91□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms