Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AL450270.1-201ENST00000606160 391 ntBASIC5.46□□□□□ -1.54
HOXC9P31274 AC016542.1-201ENST00000608259 493 ntBASIC5.46□□□□□ -1.54
HOXC9P31274 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC5.46□□□□□ -1.54
HOXC9P31274 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC5.46□□□□□ -1.54
HOXC9P31274 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC5.46□□□□□ -1.54
HOXC9P31274 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
HOXC9P31274 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
HOXC9P31274 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.46□□□□□ -1.54
HOXC9P31274 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC5.46□□□□□ -1.54
HOXC9P31274 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
HOXC9P31274 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
HOXC9P31274 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
HOXC9P31274 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC5.46□□□□□ -1.54
HOXC9P31274 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
HOXC9P31274 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
HOXC9P31274 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC5.45□□□□□ -1.54
HOXC9P31274 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC5.45□□□□□ -1.54
HOXC9P31274 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
HOXC9P31274 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC5.45□□□□□ -1.54
HOXC9P31274 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC5.45□□□□□ -1.54
HOXC9P31274 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC5.45□□□□□ -1.54
HOXC9P31274 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
HOXC9P31274 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
HOXC9P31274 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC5.45□□□□□ -1.54
HOXC9P31274 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC5.45□□□□□ -1.54
HOXC9P31274 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC5.45□□□□□ -1.54
HOXC9P31274 AC073508.1-201ENST00000428866 656 ntBASIC5.45□□□□□ -1.54
HOXC9P31274 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC5.45□□□□□ -1.54
HOXC9P31274 AL035246.1-201ENST00000433554 1255 ntBASIC5.45□□□□□ -1.54
HOXC9P31274 GOT2P5-201ENST00000433995 546 ntBASIC5.45□□□□□ -1.54
HOXC9P31274 Z99127.2-201ENST00000441426 334 ntBASIC5.45□□□□□ -1.54
HOXC9P31274 ZNF736P6Y-201ENST00000447526 1213 ntBASIC5.45□□□□□ -1.54
HOXC9P31274 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC5.45□□□□□ -1.54
HOXC9P31274 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC5.45□□□□□ -1.54
HOXC9P31274 RN7SKP46-201ENST00000515942 234 ntBASIC5.45□□□□□ -1.54
HOXC9P31274 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC5.45□□□□□ -1.54
HOXC9P31274 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC5.45□□□□□ -1.54
HOXC9P31274 AC112230.1-201ENST00000604342 547 ntBASIC5.45□□□□□ -1.54
HOXC9P31274 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC5.45□□□□□ -1.54
HOXC9P31274 AL138721.1-201ENST00000616756 179 ntBASIC5.45□□□□□ -1.54
HOXC9P31274 AL391262.2-201ENST00000622466 494 ntBASIC5.45□□□□□ -1.54
HOXC9P31274 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC5.45□□□□□ -1.54
HOXC9P31274 MAPK10-303ENST00000641324 3959 ntBASIC5.45□□□□□ -1.54
HOXC9P31274 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
HOXC9P31274 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC5.45□□□□□ -1.54
HOXC9P31274 AC110792.3-201ENST00000595906 1614 ntBASIC5.45□□□□□ -1.54
HOXC9P31274 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC5.44□□□□□ -1.54
HOXC9P31274 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
HOXC9P31274 AC003985.2-201ENST00000562268 1669 ntBASIC5.44□□□□□ -1.54
HOXC9P31274 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC5.44□□□□□ -1.54
HOXC9P31274 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC5.44□□□□□ -1.54
HOXC9P31274 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
HOXC9P31274 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC5.44□□□□□ -1.54
HOXC9P31274 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
HOXC9P31274 SNORA60-201ENST00000362396 134 ntBASIC5.44□□□□□ -1.54
HOXC9P31274 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
HOXC9P31274 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC5.44□□□□□ -1.54
HOXC9P31274 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC5.44□□□□□ -1.54
HOXC9P31274 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
HOXC9P31274 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC5.44□□□□□ -1.54
HOXC9P31274 AL034379.1-201ENST00000423216 253 ntBASIC5.44□□□□□ -1.54
HOXC9P31274 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC5.44□□□□□ -1.54
HOXC9P31274 AC006946.1-201ENST00000429106 328 ntBASIC5.44□□□□□ -1.54
HOXC9P31274 SDR42E1P3-201ENST00000438345 502 ntBASIC5.44□□□□□ -1.54
HOXC9P31274 NOTCH2P1-201ENST00000443481 624 ntBASIC5.44□□□□□ -1.54
HOXC9P31274 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC5.44□□□□□ -1.54
HOXC9P31274 MTND6P32-201ENST00000457611 483 ntBASIC5.44□□□□□ -1.54
HOXC9P31274 EIF2S2P4-201ENST00000461070 984 ntBASIC5.44□□□□□ -1.54
HOXC9P31274 AC091564.1-201ENST00000464563 479 ntBASIC5.44□□□□□ -1.54
HOXC9P31274 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC5.44□□□□□ -1.54
HOXC9P31274 AC012123.2-201ENST00000485809 248 ntBASIC5.44□□□□□ -1.54
HOXC9P31274 RNU6-352P-201ENST00000516908 107 ntBASIC5.44□□□□□ -1.54
HOXC9P31274 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC5.44□□□□□ -1.54
HOXC9P31274 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC5.44□□□□□ -1.54
HOXC9P31274 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC5.44□□□□□ -1.54
HOXC9P31274 AC006518.1-201ENST00000541449 943 ntBASIC5.44□□□□□ -1.54
HOXC9P31274 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
HOXC9P31274 AC008126.1-201ENST00000549019 480 ntBASIC5.44□□□□□ -1.54
HOXC9P31274 AC063950.1-201ENST00000552036 308 ntBASIC5.44□□□□□ -1.54
HOXC9P31274 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
HOXC9P31274 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC5.44□□□□□ -1.54
HOXC9P31274 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC5.44□□□□□ -1.54
HOXC9P31274 AC008759.1-201ENST00000589783 983 ntBASIC5.44□□□□□ -1.54
HOXC9P31274 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC5.44□□□□□ -1.54
HOXC9P31274 AL592494.3-201ENST00000609485 464 ntBASIC5.44□□□□□ -1.54
HOXC9P31274 RMST_5.1-201ENST00000618704 126 ntBASIC5.44□□□□□ -1.54
HOXC9P31274 AP006248.3-201ENST00000623580 594 ntBASIC5.44□□□□□ -1.54
HOXC9P31274 TEX41-300ENST00000631048 69 ntTSL 5 BASIC5.44□□□□□ -1.54
HOXC9P31274 OR5AC4P-202ENST00000642086 985 ntBASIC5.44□□□□□ -1.54
HOXC9P31274 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.44□□□□□ -1.54
HOXC9P31274 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC5.44□□□□□ -1.54
HOXC9P31274 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC5.44□□□□□ -1.54
HOXC9P31274 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
HOXC9P31274 AC006042.3-201ENST00000454684 1469 ntBASIC5.44□□□□□ -1.54
HOXC9P31274 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
HOXC9P31274 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC5.43□□□□□ -1.54
HOXC9P31274 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
HOXC9P31274 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
HOXC9P31274 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC5.43□□□□□ -1.54
HOXC9P31274 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.43□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms