Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC4.36□□□□□ -1.71
SDC3O75056 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC4.36□□□□□ -1.71
SDC3O75056 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.36□□□□□ -1.71
SDC3O75056 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.36□□□□□ -1.71
SDC3O75056 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.36□□□□□ -1.71
SDC3O75056 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SDC3O75056 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
SDC3O75056 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SDC3O75056 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SDC3O75056 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.35□□□□□ -1.71
SDC3O75056 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SDC3O75056 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
SDC3O75056 AL359922.3-201ENST00000624779 1670 ntBASIC4.35□□□□□ -1.71
SDC3O75056 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC4.35□□□□□ -1.71
SDC3O75056 AC092435.4-201ENST00000623012 4159 ntBASIC4.35□□□□□ -1.71
SDC3O75056 OR10J6P-201ENST00000289731 930 ntBASIC4.35□□□□□ -1.71
SDC3O75056 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
SDC3O75056 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SDC3O75056 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SDC3O75056 RNA5SP317-201ENST00000410176 116 ntBASIC4.35□□□□□ -1.71
SDC3O75056 RNA5SP311-201ENST00000411290 116 ntBASIC4.35□□□□□ -1.71
SDC3O75056 NRBF2P2-201ENST00000413087 861 ntBASIC4.35□□□□□ -1.71
SDC3O75056 SLC4A1APP1-201ENST00000419995 602 ntBASIC4.35□□□□□ -1.71
SDC3O75056 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC4.35□□□□□ -1.71
SDC3O75056 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC4.35□□□□□ -1.71
SDC3O75056 RPL23AP52-201ENST00000439311 478 ntBASIC4.35□□□□□ -1.71
SDC3O75056 MTCO3P43-201ENST00000440974 771 ntBASIC4.35□□□□□ -1.71
SDC3O75056 AL357520.1-201ENST00000441557 453 ntBASIC4.35□□□□□ -1.71
SDC3O75056 XKRY2-201ENST00000442362 1093 ntBASIC4.35□□□□□ -1.71
SDC3O75056 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC4.35□□□□□ -1.71
SDC3O75056 EIF4A2P2-201ENST00000455776 1070 ntBASIC4.35□□□□□ -1.71
SDC3O75056 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC4.35□□□□□ -1.71
SDC3O75056 AC089999.1-201ENST00000460336 374 ntBASIC4.35□□□□□ -1.71
SDC3O75056 AC108751.2-201ENST00000469993 231 ntBASIC4.35□□□□□ -1.71
SDC3O75056 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC4.35□□□□□ -1.71
SDC3O75056 RPL23AP37-201ENST00000479658 549 ntBASIC4.35□□□□□ -1.71
SDC3O75056 RNA5SP315-201ENST00000516340 116 ntBASIC4.35□□□□□ -1.71
SDC3O75056 RNU6-1004P-201ENST00000516584 111 ntBASIC4.35□□□□□ -1.71
SDC3O75056 RNA5SP312-201ENST00000517068 116 ntBASIC4.35□□□□□ -1.71
SDC3O75056 HMGB1P23-201ENST00000518743 568 ntBASIC4.35□□□□□ -1.71
SDC3O75056 IGLVVI-25-1-201ENST00000521893 249 ntBASIC4.35□□□□□ -1.71
SDC3O75056 AC087272.1-201ENST00000523624 533 ntBASIC4.35□□□□□ -1.71
SDC3O75056 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC4.35□□□□□ -1.71
SDC3O75056 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC4.35□□□□□ -1.71
SDC3O75056 AC068446.3-201ENST00000555285 382 ntBASIC4.35□□□□□ -1.71
SDC3O75056 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC4.35□□□□□ -1.71
SDC3O75056 ADAD1P2-201ENST00000588476 646 ntBASIC4.35□□□□□ -1.71
SDC3O75056 AC055764.2-201ENST00000610089 670 ntBASIC4.35□□□□□ -1.71
SDC3O75056 SNX18P1Y-201ENST00000616231 511 ntBASIC4.35□□□□□ -1.71
SDC3O75056 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.35□□□□□ -1.71
SDC3O75056 MAPK10-304ENST00000641341 3984 ntBASIC4.35□□□□□ -1.71
SDC3O75056 MFSD8-242ENST00000641690 4199 ntBASIC4.35□□□□□ -1.71
SDC3O75056 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC4.35□□□□□ -1.71
SDC3O75056 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
SDC3O75056 AC006971.1-201ENST00000407916 4486 ntBASIC4.35□□□□□ -1.71
SDC3O75056 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SDC3O75056 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC4.35□□□□□ -1.71
SDC3O75056 LINC00622-201ENST00000562811 1570 ntBASIC4.35□□□□□ -1.71
SDC3O75056 AL158163.1-201ENST00000603915 1649 ntBASIC4.35□□□□□ -1.71
SDC3O75056 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
SDC3O75056 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
SDC3O75056 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
SDC3O75056 EIF2AP4-201ENST00000424793 1781 ntBASIC4.35□□□□□ -1.71
SDC3O75056 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.35□□□□□ -1.71
SDC3O75056 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SDC3O75056 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SDC3O75056 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SDC3O75056 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
SDC3O75056 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
SDC3O75056 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
SDC3O75056 SNORD51.1-201ENST00000365405 77 ntBASIC4.34□□□□□ -1.71
SDC3O75056 RNU1-64P-201ENST00000365443 163 ntBASIC4.34□□□□□ -1.71
SDC3O75056 RNU1-13P-201ENST00000384499 162 ntBASIC4.34□□□□□ -1.71
SDC3O75056 MIR134-201ENST00000385258 73 ntBASIC4.34□□□□□ -1.71
SDC3O75056 ATP5F1P2-201ENST00000398143 760 ntBASIC4.34□□□□□ -1.71
SDC3O75056 AL022722.2-201ENST00000402519 180 ntBASIC4.34□□□□□ -1.71
SDC3O75056 RNA5SP146-201ENST00000410743 123 ntBASIC4.34□□□□□ -1.71
SDC3O75056 AC073136.2-201ENST00000417282 849 ntBASIC4.34□□□□□ -1.71
SDC3O75056 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.34□□□□□ -1.71
SDC3O75056 AL139095.3-201ENST00000419672 1203 ntBASIC4.34□□□□□ -1.71
SDC3O75056 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SDC3O75056 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC4.34□□□□□ -1.71
SDC3O75056 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.34□□□□□ -1.71
SDC3O75056 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC4.34□□□□□ -1.71
SDC3O75056 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC4.34□□□□□ -1.71
SDC3O75056 ARL4AP3-201ENST00000441452 574 ntBASIC4.34□□□□□ -1.71
SDC3O75056 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.34□□□□□ -1.71
SDC3O75056 AC239809.1-201ENST00000450470 217 ntBASIC4.34□□□□□ -1.71
SDC3O75056 HMGB1P26-201ENST00000452520 628 ntBASIC4.34□□□□□ -1.71
SDC3O75056 RPS7P7-201ENST00000463499 571 ntBASIC4.34□□□□□ -1.71
SDC3O75056 MTCO1P31-201ENST00000506355 492 ntBASIC4.34□□□□□ -1.71
SDC3O75056 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
SDC3O75056 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC4.34□□□□□ -1.71
SDC3O75056 TVP23BP1-201ENST00000557500 617 ntBASIC4.34□□□□□ -1.71
SDC3O75056 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC4.34□□□□□ -1.71
SDC3O75056 AC110743.1-201ENST00000584870 478 ntBASIC4.34□□□□□ -1.71
SDC3O75056 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC4.34□□□□□ -1.71
SDC3O75056 AC040174.2-201ENST00000602701 465 ntBASIC4.34□□□□□ -1.71
SDC3O75056 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC4.34□□□□□ -1.71
SDC3O75056 uc_338.13-201ENST00000618243 179 ntBASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 95.1 ms