Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
CCDC42Q96M95 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC4.31□□□□□ -1.72
CCDC42Q96M95 AC095050.2-201ENST00000510748 1458 ntBASIC4.3□□□□□ -1.72
CCDC42Q96M95 AC027287.1-201ENST00000553115 1453 ntBASIC4.3□□□□□ -1.72
CCDC42Q96M95 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC42Q96M95 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.3□□□□□ -1.72
CCDC42Q96M95 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
CCDC42Q96M95 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC42Q96M95 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC42Q96M95 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.3□□□□□ -1.72
CCDC42Q96M95 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC42Q96M95 AL161909.1-201ENST00000397390 712 ntBASIC4.3□□□□□ -1.72
CCDC42Q96M95 AMD1P2-201ENST00000412936 992 ntBASIC4.3□□□□□ -1.72
CCDC42Q96M95 AL450992.3-201ENST00000413192 568 ntBASIC4.3□□□□□ -1.72
CCDC42Q96M95 AL138787.1-202ENST00000437804 898 ntBASIC4.3□□□□□ -1.72
CCDC42Q96M95 HMGB1P37-201ENST00000439613 609 ntBASIC4.3□□□□□ -1.72
CCDC42Q96M95 snoU13.1-201ENST00000459157 104 ntBASIC4.3□□□□□ -1.72
CCDC42Q96M95 RPL38P1-201ENST00000460914 211 ntBASIC4.3□□□□□ -1.72
CCDC42Q96M95 BTF3L4P4-201ENST00000506381 449 ntBASIC4.3□□□□□ -1.72
CCDC42Q96M95 AC005798.1-201ENST00000513715 387 ntBASIC4.3□□□□□ -1.72
CCDC42Q96M95 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC42Q96M95 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC42Q96M95 AC092851.1-201ENST00000535964 478 ntBASIC4.3□□□□□ -1.72
CCDC42Q96M95 PSMB7P1-201ENST00000556349 514 ntBASIC4.3□□□□□ -1.72
CCDC42Q96M95 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC42Q96M95 AL135786.2-201ENST00000608422 615 ntBASIC4.3□□□□□ -1.72
CCDC42Q96M95 MIR7151-201ENST00000617477 60 ntBASIC4.3□□□□□ -1.72
CCDC42Q96M95 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC4.3□□□□□ -1.72
CCDC42Q96M95 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC4.3□□□□□ -1.72
CCDC42Q96M95 FAM35DP-201ENST00000323387 2712 ntBASIC4.3□□□□□ -1.72
CCDC42Q96M95 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.29□□□□□ -1.72
CCDC42Q96M95 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC42Q96M95 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC42Q96M95 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC42Q96M95 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC42Q96M95 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
CCDC42Q96M95 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.29□□□□□ -1.72
CCDC42Q96M95 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC42Q96M95 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC42Q96M95 RNU6-398P-201ENST00000384143 109 ntBASIC4.29□□□□□ -1.72
CCDC42Q96M95 HMGB3P19-201ENST00000403971 560 ntBASIC4.29□□□□□ -1.72
CCDC42Q96M95 RPL7AP73-201ENST00000413490 353 ntBASIC4.29□□□□□ -1.72
CCDC42Q96M95 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC42Q96M95 NPM1P34-201ENST00000428821 893 ntBASIC4.29□□□□□ -1.72
CCDC42Q96M95 CNOT7P1-201ENST00000429006 852 ntBASIC4.29□□□□□ -1.72
CCDC42Q96M95 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.29□□□□□ -1.72
CCDC42Q96M95 BTF3P10-201ENST00000433415 495 ntBASIC4.29□□□□□ -1.72
CCDC42Q96M95 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC4.29□□□□□ -1.72
CCDC42Q96M95 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC4.29□□□□□ -1.72
CCDC42Q96M95 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.29□□□□□ -1.72
CCDC42Q96M95 ACTR3P2-201ENST00000439585 1257 ntBASIC4.29□□□□□ -1.72
CCDC42Q96M95 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC42Q96M95 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC42Q96M95 RN7SL610P-201ENST00000463845 291 ntBASIC4.29□□□□□ -1.72
CCDC42Q96M95 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.29□□□□□ -1.72
CCDC42Q96M95 AC041039.1-201ENST00000485656 536 ntBASIC4.29□□□□□ -1.72
CCDC42Q96M95 AC013356.1-201ENST00000489027 564 ntBASIC4.29□□□□□ -1.72
CCDC42Q96M95 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC42Q96M95 DEFB109D-201ENST00000529497 240 ntBASIC4.29□□□□□ -1.72
CCDC42Q96M95 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC42Q96M95 NPM1P45-201ENST00000583151 559 ntBASIC4.29□□□□□ -1.72
CCDC42Q96M95 EIF1P6-201ENST00000600054 334 ntBASIC4.29□□□□□ -1.72
CCDC42Q96M95 AC019193.2-201ENST00000610012 634 ntBASIC4.29□□□□□ -1.72
CCDC42Q96M95 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.29□□□□□ -1.72
CCDC42Q96M95 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC4.29□□□□□ -1.72
CCDC42Q96M95 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC42Q96M95 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
CCDC42Q96M95 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC42Q96M95 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CCDC42Q96M95 C3orf49-201ENST00000295896 1292 ntAPPRIS P5 TSL 2 BASIC4.28□□□□□ -1.72
CCDC42Q96M95 OR4K17-201ENST00000315543 1032 ntBASIC4.28□□□□□ -1.72
CCDC42Q96M95 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
CCDC42Q96M95 RN7SKP44-201ENST00000363602 316 ntBASIC4.28□□□□□ -1.72
CCDC42Q96M95 RNU6-1279P-201ENST00000383917 103 ntBASIC4.28□□□□□ -1.72
CCDC42Q96M95 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
CCDC42Q96M95 HMGN2P8-201ENST00000391458 268 ntBASIC4.28□□□□□ -1.72
CCDC42Q96M95 ELOCP19-201ENST00000411919 318 ntBASIC4.28□□□□□ -1.72
CCDC42Q96M95 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CCDC42Q96M95 IFNNP1-201ENST00000429219 553 ntBASIC4.28□□□□□ -1.72
CCDC42Q96M95 PPIAP17-201ENST00000438507 471 ntBASIC4.28□□□□□ -1.72
CCDC42Q96M95 CBX1P1-201ENST00000440184 427 ntBASIC4.28□□□□□ -1.72
CCDC42Q96M95 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CCDC42Q96M95 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC4.28□□□□□ -1.72
CCDC42Q96M95 AC022431.1-201ENST00000450941 438 ntBASIC4.28□□□□□ -1.72
CCDC42Q96M95 RN7SL604P-201ENST00000492589 296 ntBASIC4.28□□□□□ -1.72
CCDC42Q96M95 RPL7P24-201ENST00000493052 752 ntBASIC4.28□□□□□ -1.72
CCDC42Q96M95 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC4.28□□□□□ -1.72
CCDC42Q96M95 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC4.28□□□□□ -1.72
CCDC42Q96M95 OR5AN2P-201ENST00000534535 896 ntBASIC4.28□□□□□ -1.72
CCDC42Q96M95 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC4.28□□□□□ -1.72
CCDC42Q96M95 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC4.28□□□□□ -1.72
CCDC42Q96M95 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC4.28□□□□□ -1.72
CCDC42Q96M95 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC4.28□□□□□ -1.72
CCDC42Q96M95 AC110741.2-201ENST00000605278 268 ntBASIC4.28□□□□□ -1.72
CCDC42Q96M95 Mico1.1-201ENST00000611698 204 ntBASIC4.28□□□□□ -1.72
CCDC42Q96M95 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
CCDC42Q96M95 MFSD8-216ENST00000641147 4009 ntBASIC4.28□□□□□ -1.72
CCDC42Q96M95 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
CCDC42Q96M95 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
CCDC42Q96M95 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms