Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC244258.1-201ENST00000637553 1071 ntBASIC5.08□□□□□ -1.6
COL18A1P39060 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC5.08□□□□□ -1.6
COL18A1P39060 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL18A1P39060 MTCO1P12-201ENST00000414273 1543 ntBASIC5.07□□□□□ -1.6
COL18A1P39060 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.07□□□□□ -1.6
COL18A1P39060 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
COL18A1P39060 ZNF602P-201ENST00000405929 924 ntBASIC5.07□□□□□ -1.6
COL18A1P39060 SNORA3C-201ENST00000408792 125 ntBASIC5.07□□□□□ -1.6
COL18A1P39060 SEPT7P8-201ENST00000413308 775 ntBASIC5.07□□□□□ -1.6
COL18A1P39060 AL590609.2-201ENST00000421430 368 ntBASIC5.07□□□□□ -1.6
COL18A1P39060 CREM-220ENST00000463314 964 ntTSL 2 BASIC5.07□□□□□ -1.6
COL18A1P39060 AP000563.1-201ENST00000490865 758 ntBASIC5.07□□□□□ -1.6
COL18A1P39060 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC5.07□□□□□ -1.6
COL18A1P39060 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC5.07□□□□□ -1.6
COL18A1P39060 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC5.07□□□□□ -1.6
COL18A1P39060 AC103968.1-201ENST00000557841 573 ntBASIC5.07□□□□□ -1.6
COL18A1P39060 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC5.07□□□□□ -1.6
COL18A1P39060 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC5.07□□□□□ -1.6
COL18A1P39060 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
COL18A1P39060 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL18A1P39060 RNU1-33P-201ENST00000364249 162 ntBASIC5.06□□□□□ -1.6
COL18A1P39060 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC5.06□□□□□ -1.6
COL18A1P39060 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC5.06□□□□□ -1.6
COL18A1P39060 AL139350.1-201ENST00000448825 408 ntTSL 3 BASIC5.06□□□□□ -1.6
COL18A1P39060 BX510359.1-201ENST00000456973 237 ntBASIC5.06□□□□□ -1.6
COL18A1P39060 AC006511.1-201ENST00000470614 315 ntBASIC5.06□□□□□ -1.6
COL18A1P39060 RPL31P61-201ENST00000496160 376 ntBASIC5.06□□□□□ -1.6
COL18A1P39060 RAC1P2-201ENST00000511164 579 ntBASIC5.06□□□□□ -1.6
COL18A1P39060 DEFB109D-201ENST00000529497 240 ntBASIC5.06□□□□□ -1.6
COL18A1P39060 MESTIT1_2.1-201ENST00000616328 235 ntBASIC5.06□□□□□ -1.6
COL18A1P39060 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC5.06□□□□□ -1.6
COL18A1P39060 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
COL18A1P39060 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
COL18A1P39060 AC007823.1-201ENST00000569932 1566 ntBASIC5.06□□□□□ -1.6
COL18A1P39060 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL18A1P39060 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
COL18A1P39060 SNORD9-201ENST00000362566 104 ntBASIC5.06□□□□□ -1.6
COL18A1P39060 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
COL18A1P39060 RPS21P8-201ENST00000413365 247 ntBASIC5.06□□□□□ -1.6
COL18A1P39060 AC005300.1-201ENST00000428401 373 ntBASIC5.06□□□□□ -1.6
COL18A1P39060 PSMC1P13-201ENST00000458195 985 ntBASIC5.06□□□□□ -1.6
COL18A1P39060 RPS4XP12-201ENST00000461747 709 ntBASIC5.06□□□□□ -1.6
COL18A1P39060 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC5.06□□□□□ -1.6
COL18A1P39060 RNA5SP164-201ENST00000516533 110 ntBASIC5.06□□□□□ -1.6
COL18A1P39060 SNORA70.18-201ENST00000516696 98 ntBASIC5.06□□□□□ -1.6
COL18A1P39060 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC5.06□□□□□ -1.6
COL18A1P39060 AL355365.1-201ENST00000616480 294 ntBASIC5.06□□□□□ -1.6
COL18A1P39060 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
COL18A1P39060 AL669831.5-218ENST00000591702 1873 ntBASIC5.06□□□□□ -1.6
COL18A1P39060 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC5.05□□□□□ -1.6
COL18A1P39060 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL18A1P39060 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL18A1P39060 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL18A1P39060 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL18A1P39060 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC5.05□□□□□ -1.6
COL18A1P39060 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC5.05□□□□□ -1.6
COL18A1P39060 TPT1P1-201ENST00000458495 518 ntBASIC5.05□□□□□ -1.6
COL18A1P39060 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC5.05□□□□□ -1.6
COL18A1P39060 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL18A1P39060 SMCR2_2.1-201ENST00000619783 161 ntBASIC5.05□□□□□ -1.6
COL18A1P39060 USP8P1-201ENST00000494673 3183 ntBASIC5.05□□□□□ -1.6
COL18A1P39060 CDY11P-201ENST00000447168 1651 ntBASIC5.05□□□□□ -1.6
COL18A1P39060 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL18A1P39060 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC5.04□□□□□ -1.6
COL18A1P39060 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL18A1P39060 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC5.04□□□□□ -1.6
COL18A1P39060 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC5.04□□□□□ -1.6
COL18A1P39060 AC073387.1-201ENST00000453261 709 ntBASIC5.04□□□□□ -1.6
COL18A1P39060 AC104849.1-201ENST00000462623 405 ntBASIC5.04□□□□□ -1.6
COL18A1P39060 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC5.04□□□□□ -1.6
COL18A1P39060 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL18A1P39060 RNA5SP208-201ENST00000516156 78 ntBASIC5.04□□□□□ -1.6
COL18A1P39060 AL354760.1-201ENST00000608357 643 ntBASIC5.04□□□□□ -1.6
COL18A1P39060 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL18A1P39060 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL18A1P39060 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL18A1P39060 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
COL18A1P39060 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC5.04□□□□□ -1.6
COL18A1P39060 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC5.04□□□□□ -1.6
COL18A1P39060 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL18A1P39060 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL18A1P39060 AL591503.2-201ENST00000442314 1005 ntBASIC5.04□□□□□ -1.6
COL18A1P39060 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL18A1P39060 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC5.04□□□□□ -1.6
COL18A1P39060 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC5.04□□□□□ -1.6
COL18A1P39060 SNRPCP3-201ENST00000474888 476 ntBASIC5.04□□□□□ -1.6
COL18A1P39060 HMGN1P11-201ENST00000508668 303 ntBASIC5.04□□□□□ -1.6
COL18A1P39060 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC5.04□□□□□ -1.6
COL18A1P39060 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC5.04□□□□□ -1.6
COL18A1P39060 CSNK1A1P1-202ENST00000563423 981 ntBASIC5.04□□□□□ -1.6
COL18A1P39060 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC5.04□□□□□ -1.6
COL18A1P39060 MIR8058-201ENST00000615737 89 ntBASIC5.04□□□□□ -1.6
COL18A1P39060 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL18A1P39060 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC5.03□□□□□ -1.6
COL18A1P39060 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5.03□□□□□ -1.6
COL18A1P39060 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.03□□□□□ -1.6
COL18A1P39060 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
COL18A1P39060 VDAC2P1-201ENST00000399358 958 ntBASIC5.03□□□□□ -1.6
COL18A1P39060 MIR1251-201ENST00000408552 70 ntBASIC5.03□□□□□ -1.6
COL18A1P39060 AL158156.1-201ENST00000422509 473 ntBASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms