Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
VPS13DQ5THJ4 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC2.59□□□□□ -1.99
VPS13DQ5THJ4 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
VPS13DQ5THJ4 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
VPS13DQ5THJ4 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC2.59□□□□□ -1.99
VPS13DQ5THJ4 ATP5JP1-201ENST00000431631 322 ntBASIC2.59□□□□□ -1.99
VPS13DQ5THJ4 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC2.59□□□□□ -1.99
VPS13DQ5THJ4 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC2.59□□□□□ -1.99
VPS13DQ5THJ4 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC2.59□□□□□ -1.99
VPS13DQ5THJ4 RPL23AP87-202ENST00000573039 466 ntBASIC2.59□□□□□ -1.99
VPS13DQ5THJ4 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC2.59□□□□□ -1.99
VPS13DQ5THJ4 AL133383.2-201ENST00000622958 2336 ntBASIC2.59□□□□□ -1.99
VPS13DQ5THJ4 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
VPS13DQ5THJ4 ALMS1-204ENST00000484298 12595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -1.99
VPS13DQ5THJ4 ABCA1-202ENST00000374736 10494 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
VPS13DQ5THJ4 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC2.59□□□□□ -1.99
VPS13DQ5THJ4 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC2.59□□□□□ -1.99
VPS13DQ5THJ4 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -2
VPS13DQ5THJ4 GON4L-217ENST00000615926 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -2
VPS13DQ5THJ4 OSTCP5-201ENST00000425293 453 ntBASIC2.59□□□□□ -2
VPS13DQ5THJ4 GAS5-223ENST00000452197 483 ntTSL 3 BASIC2.59□□□□□ -2
VPS13DQ5THJ4 RN7SL601P-201ENST00000471221 293 ntBASIC2.59□□□□□ -2
VPS13DQ5THJ4 AL136126.1-201ENST00000473603 402 ntBASIC2.59□□□□□ -2
VPS13DQ5THJ4 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC2.59□□□□□ -2
VPS13DQ5THJ4 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC2.59□□□□□ -2
VPS13DQ5THJ4 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC2.59□□□□□ -2
VPS13DQ5THJ4 AC010401.2-201ENST00000575137 4934 ntBASIC2.59□□□□□ -2
VPS13DQ5THJ4 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
VPS13DQ5THJ4 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC2.59□□□□□ -2
VPS13DQ5THJ4 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC2.59□□□□□ -2
VPS13DQ5THJ4 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -2
VPS13DQ5THJ4 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
VPS13DQ5THJ4 CCDC80-201ENST00000206423 12430 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
VPS13DQ5THJ4 AC108941.1-201ENST00000502853 530 ntBASIC2.58□□□□□ -2
VPS13DQ5THJ4 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC2.58□□□□□ -2
VPS13DQ5THJ4 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC2.58□□□□□ -2
VPS13DQ5THJ4 AC012493.2-201ENST00000595083 291 ntBASIC2.58□□□□□ -2
VPS13DQ5THJ4 AC010680.3-201ENST00000604215 520 ntBASIC2.58□□□□□ -2
VPS13DQ5THJ4 AC008966.2-201ENST00000606157 453 ntBASIC2.58□□□□□ -2
VPS13DQ5THJ4 AC097505.1-201ENST00000610199 565 ntBASIC2.58□□□□□ -2
VPS13DQ5THJ4 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
VPS13DQ5THJ4 ZHX3-201ENST00000309060 10030 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
VPS13DQ5THJ4 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
VPS13DQ5THJ4 FTO-206ENST00000471389 11766 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
VPS13DQ5THJ4 ADAMTS6-203ENST00000381055 7311 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
VPS13DQ5THJ4 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC2.58□□□□□ -2
VPS13DQ5THJ4 AC120036.2-201ENST00000509729 1474 ntBASIC2.58□□□□□ -2
VPS13DQ5THJ4 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC2.58□□□□□ -2
VPS13DQ5THJ4 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC2.58□□□□□ -2
VPS13DQ5THJ4 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
VPS13DQ5THJ4 RNA5SP374-201ENST00000362939 125 ntBASIC2.58□□□□□ -2
VPS13DQ5THJ4 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC2.58□□□□□ -2
VPS13DQ5THJ4 Z97055.1-201ENST00000419730 712 ntBASIC2.58□□□□□ -2
VPS13DQ5THJ4 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC2.58□□□□□ -2
VPS13DQ5THJ4 RPL38P1-201ENST00000460914 211 ntBASIC2.58□□□□□ -2
VPS13DQ5THJ4 LEF1-218ENST00000512172 598 ntTSL 2 BASIC2.58□□□□□ -2
VPS13DQ5THJ4 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC2.58□□□□□ -2
VPS13DQ5THJ4 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.58□□□□□ -2
VPS13DQ5THJ4 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC2.58□□□□□ -2
VPS13DQ5THJ4 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC2.58□□□□□ -2
VPS13DQ5THJ4 AC007823.1-201ENST00000569932 1566 ntBASIC2.58□□□□□ -2
VPS13DQ5THJ4 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
VPS13DQ5THJ4 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
VPS13DQ5THJ4 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC2.58□□□□□ -2
VPS13DQ5THJ4 Y_RNA.500-201ENST00000384466 111 ntBASIC2.58□□□□□ -2
VPS13DQ5THJ4 AL080315.1-201ENST00000406055 466 ntBASIC2.58□□□□□ -2
VPS13DQ5THJ4 RBMY2UP-201ENST00000453474 324 ntBASIC2.58□□□□□ -2
VPS13DQ5THJ4 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC2.58□□□□□ -2
VPS13DQ5THJ4 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC2.58□□□□□ -2
VPS13DQ5THJ4 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC2.58□□□□□ -2
VPS13DQ5THJ4 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC2.58□□□□□ -2
VPS13DQ5THJ4 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC2.58□□□□□ -2
VPS13DQ5THJ4 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC2.58□□□□□ -2
VPS13DQ5THJ4 AL159169.3-201ENST00000608871 561 ntBASIC2.58□□□□□ -2
VPS13DQ5THJ4 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC2.58□□□□□ -2
VPS13DQ5THJ4 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC2.58□□□□□ -2
VPS13DQ5THJ4 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC2.58□□□□□ -2
VPS13DQ5THJ4 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC2.58□□□□□ -2
VPS13DQ5THJ4 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC2.58□□□□□ -2
VPS13DQ5THJ4 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC2.58□□□□□ -2
VPS13DQ5THJ4 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC2.58□□□□□ -2
VPS13DQ5THJ4 OR51A6P-201ENST00000418680 1004 ntBASIC2.58□□□□□ -2
VPS13DQ5THJ4 AL591503.2-201ENST00000442314 1005 ntBASIC2.58□□□□□ -2
VPS13DQ5THJ4 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC2.58□□□□□ -2
VPS13DQ5THJ4 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC2.58□□□□□ -2
VPS13DQ5THJ4 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC2.58□□□□□ -2
VPS13DQ5THJ4 AC100770.1-201ENST00000532310 322 ntBASIC2.58□□□□□ -2
VPS13DQ5THJ4 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC2.58□□□□□ -2
VPS13DQ5THJ4 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC2.58□□□□□ -2
VPS13DQ5THJ4 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC2.58□□□□□ -2
VPS13DQ5THJ4 ASXL2-201ENST00000336112 8889 ntAPPRIS ALT2 TSL 1 (best) BASIC2.58□□□□□ -2
VPS13DQ5THJ4 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC2.58□□□□□ -2
VPS13DQ5THJ4 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
VPS13DQ5THJ4 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
VPS13DQ5THJ4 TSC1-201ENST00000298552 8604 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
VPS13DQ5THJ4 EPGN-201ENST00000332112 847 ntTSL 1 (best) BASIC2.57□□□□□ -2
VPS13DQ5THJ4 RNA5SP120-201ENST00000410900 112 ntBASIC2.57□□□□□ -2
VPS13DQ5THJ4 AL591473.1-201ENST00000464297 313 ntBASIC2.57□□□□□ -2
VPS13DQ5THJ4 AC024224.1-201ENST00000538284 609 ntBASIC2.57□□□□□ -2
VPS13DQ5THJ4 AC016957.2-201ENST00000616998 848 ntBASIC2.57□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms