Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AC139783.2-201ENST00000504847 1145 ntBASIC3.69□□□□□ -1.82
CHD3Q12873 STMN1P2-201ENST00000508435 439 ntBASIC3.69□□□□□ -1.82
CHD3Q12873 SCARNA13-201ENST00000516672 275 ntBASIC3.69□□□□□ -1.82
CHD3Q12873 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
CHD3Q12873 CCNG2P1-201ENST00000549521 1000 ntBASIC3.69□□□□□ -1.82
CHD3Q12873 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC3.69□□□□□ -1.82
CHD3Q12873 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC3.69□□□□□ -1.82
CHD3Q12873 PSMB7P1-201ENST00000556349 514 ntBASIC3.69□□□□□ -1.82
CHD3Q12873 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC3.69□□□□□ -1.82
CHD3Q12873 AC096553.1-201ENST00000605169 829 ntBASIC3.69□□□□□ -1.82
CHD3Q12873 BNIP3P19-201ENST00000605397 577 ntBASIC3.69□□□□□ -1.82
CHD3Q12873 AC140113.4-201ENST00000622087 222 ntBASIC3.69□□□□□ -1.82
CHD3Q12873 MIR4727-201ENST00000622232 55 ntBASIC3.69□□□□□ -1.82
CHD3Q12873 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC3.69□□□□□ -1.82
CHD3Q12873 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
CHD3Q12873 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
CHD3Q12873 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC3.69□□□□□ -1.82
CHD3Q12873 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CHD3Q12873 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC3.68□□□□□ -1.82
CHD3Q12873 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CHD3Q12873 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CHD3Q12873 SKP1P3-201ENST00000429280 487 ntBASIC3.68□□□□□ -1.82
CHD3Q12873 AC007389.2-201ENST00000434630 306 ntBASIC3.68□□□□□ -1.82
CHD3Q12873 ARAFP2-201ENST00000440565 559 ntBASIC3.68□□□□□ -1.82
CHD3Q12873 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CHD3Q12873 ARL4AP3-201ENST00000441452 574 ntBASIC3.68□□□□□ -1.82
CHD3Q12873 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC3.68□□□□□ -1.82
CHD3Q12873 RPL7P22-201ENST00000466005 733 ntBASIC3.68□□□□□ -1.82
CHD3Q12873 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC3.68□□□□□ -1.82
CHD3Q12873 VWA8P1-201ENST00000510889 176 ntBASIC3.68□□□□□ -1.82
CHD3Q12873 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC3.68□□□□□ -1.82
CHD3Q12873 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC3.68□□□□□ -1.82
CHD3Q12873 AL139395.1-201ENST00000603662 160 ntBASIC3.68□□□□□ -1.82
CHD3Q12873 AL031666.3-201ENST00000609320 1006 ntBASIC3.68□□□□□ -1.82
CHD3Q12873 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC3.68□□□□□ -1.82
CHD3Q12873 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC3.68□□□□□ -1.82
CHD3Q12873 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC3.68□□□□□ -1.82
CHD3Q12873 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.68□□□□□ -1.82
CHD3Q12873 AC107027.3-201ENST00000565095 3473 ntBASIC3.68□□□□□ -1.82
CHD3Q12873 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CHD3Q12873 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CHD3Q12873 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
CHD3Q12873 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CHD3Q12873 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CHD3Q12873 MIR448-201ENST00000362131 111 ntBASIC3.68□□□□□ -1.82
CHD3Q12873 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.68□□□□□ -1.82
CHD3Q12873 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CHD3Q12873 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC3.68□□□□□ -1.82
CHD3Q12873 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CHD3Q12873 RPL23AP48-201ENST00000406913 488 ntBASIC3.68□□□□□ -1.82
CHD3Q12873 RNA5SP306-201ENST00000411087 107 ntBASIC3.68□□□□□ -1.82
CHD3Q12873 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC3.68□□□□□ -1.82
CHD3Q12873 snoU13.24-201ENST00000458998 104 ntBASIC3.68□□□□□ -1.82
CHD3Q12873 AC107015.1-201ENST00000466902 747 ntBASIC3.68□□□□□ -1.82
CHD3Q12873 AC010476.1-201ENST00000519111 851 ntBASIC3.68□□□□□ -1.82
CHD3Q12873 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC3.68□□□□□ -1.82
CHD3Q12873 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC3.68□□□□□ -1.82
CHD3Q12873 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC3.68□□□□□ -1.82
CHD3Q12873 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
CHD3Q12873 LGI1-209ENST00000627699 664 ntTSL 3 BASIC3.68□□□□□ -1.82
CHD3Q12873 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
CHD3Q12873 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
CHD3Q12873 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC3.68□□□□□ -1.82
CHD3Q12873 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.68□□□□□ -1.82
CHD3Q12873 MAPK10-253ENST00000641010 4072 ntBASIC3.68□□□□□ -1.82
CHD3Q12873 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
CHD3Q12873 HSPD1P14-201ENST00000432666 1618 ntBASIC3.68□□□□□ -1.82
CHD3Q12873 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CHD3Q12873 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CHD3Q12873 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CHD3Q12873 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC3.67□□□□□ -1.82
CHD3Q12873 MIR513A2-201ENST00000385249 127 ntBASIC3.67□□□□□ -1.82
CHD3Q12873 AL078604.1-201ENST00000404609 466 ntBASIC3.67□□□□□ -1.82
CHD3Q12873 AL080315.1-201ENST00000406055 466 ntBASIC3.67□□□□□ -1.82
CHD3Q12873 RPL7P2-201ENST00000427639 268 ntBASIC3.67□□□□□ -1.82
CHD3Q12873 AL050321.1-201ENST00000432363 400 ntBASIC3.67□□□□□ -1.82
CHD3Q12873 SNORA59A-201ENST00000459326 152 ntBASIC3.67□□□□□ -1.82
CHD3Q12873 AC006517.1-201ENST00000480485 328 ntBASIC3.67□□□□□ -1.82
CHD3Q12873 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.67□□□□□ -1.82
CHD3Q12873 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC3.67□□□□□ -1.82
CHD3Q12873 YPEL5P3-201ENST00000547227 352 ntBASIC3.67□□□□□ -1.82
CHD3Q12873 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC3.67□□□□□ -1.82
CHD3Q12873 AC069200.1-201ENST00000609511 323 ntBASIC3.67□□□□□ -1.82
CHD3Q12873 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC3.67□□□□□ -1.82
CHD3Q12873 AC055839.1-201ENST00000634467 498 ntBASIC3.67□□□□□ -1.82
CHD3Q12873 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CHD3Q12873 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
CHD3Q12873 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CHD3Q12873 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC3.67□□□□□ -1.82
CHD3Q12873 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CHD3Q12873 SLC2A3P1-201ENST00000519666 1451 ntBASIC3.67□□□□□ -1.82
CHD3Q12873 EIF2AP4-201ENST00000424793 1781 ntBASIC3.67□□□□□ -1.82
CHD3Q12873 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC3.67□□□□□ -1.82
CHD3Q12873 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
CHD3Q12873 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
CHD3Q12873 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
CHD3Q12873 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC3.66□□□□□ -1.82
CHD3Q12873 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CHD3Q12873 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CHD3Q12873 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms