Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC5.11□□□□□ -1.59
COL18A1P39060 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL18A1P39060 AP001284.1-201ENST00000528393 2118 ntBASIC5.11□□□□□ -1.59
COL18A1P39060 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL18A1P39060 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL18A1P39060 MTND5P1-201ENST00000445440 1375 ntBASIC5.11□□□□□ -1.59
COL18A1P39060 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC5.11□□□□□ -1.59
COL18A1P39060 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
COL18A1P39060 MAPK10-320ENST00000641462 6696 ntBASIC5.11□□□□□ -1.59
COL18A1P39060 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL18A1P39060 Y_RNA.111-201ENST00000363248 100 ntBASIC5.11□□□□□ -1.59
COL18A1P39060 OR52E6-202ENST00000379946 954 ntBASIC5.11□□□□□ -1.59
COL18A1P39060 SETP6-201ENST00000479329 568 ntBASIC5.11□□□□□ -1.59
COL18A1P39060 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC5.11□□□□□ -1.59
COL18A1P39060 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC5.11□□□□□ -1.59
COL18A1P39060 AC022695.1-201ENST00000522089 237 ntBASIC5.11□□□□□ -1.59
COL18A1P39060 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
COL18A1P39060 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC5.11□□□□□ -1.59
COL18A1P39060 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC5.11□□□□□ -1.59
COL18A1P39060 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC5.11□□□□□ -1.59
COL18A1P39060 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC5.11□□□□□ -1.59
COL18A1P39060 ELOCP35-201ENST00000604289 336 ntBASIC5.11□□□□□ -1.59
COL18A1P39060 SNORD91B-202ENST00000608459 222 ntBASIC5.11□□□□□ -1.59
COL18A1P39060 AP001002.2-201ENST00000625137 386 ntBASIC5.11□□□□□ -1.59
COL18A1P39060 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC5.1□□□□□ -1.59
COL18A1P39060 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
COL18A1P39060 SAMMSON-213ENST00000641336 1521 ntBASIC5.1□□□□□ -1.59
COL18A1P39060 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL18A1P39060 AP002512.4-202ENST00000641599 4530 ntBASIC5.1□□□□□ -1.59
COL18A1P39060 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC5.1□□□□□ -1.59
COL18A1P39060 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL18A1P39060 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL18A1P39060 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
COL18A1P39060 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL18A1P39060 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL18A1P39060 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC5.1□□□□□ -1.59
COL18A1P39060 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC5.1□□□□□ -1.59
COL18A1P39060 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL18A1P39060 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL18A1P39060 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL18A1P39060 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC5.1□□□□□ -1.59
COL18A1P39060 AL133244.1-201ENST00000456007 258 ntBASIC5.1□□□□□ -1.59
COL18A1P39060 RPL23AP12-201ENST00000467573 473 ntBASIC5.1□□□□□ -1.59
COL18A1P39060 RPL5P12-201ENST00000477071 851 ntBASIC5.1□□□□□ -1.59
COL18A1P39060 RN7SKP46-201ENST00000515942 234 ntBASIC5.1□□□□□ -1.59
COL18A1P39060 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC5.1□□□□□ -1.59
COL18A1P39060 PCNP-208ENST00000627393 136 ntTSL 2 BASIC5.1□□□□□ -1.59
COL18A1P39060 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC5.1□□□□□ -1.59
COL18A1P39060 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC5.1□□□□□ -1.59
COL18A1P39060 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC5.1□□□□□ -1.59
COL18A1P39060 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
COL18A1P39060 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC5.09□□□□□ -1.59
COL18A1P39060 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC5.09□□□□□ -1.59
COL18A1P39060 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL18A1P39060 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.09□□□□□ -1.59
COL18A1P39060 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL18A1P39060 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC5.09□□□□□ -1.59
COL18A1P39060 RPS29P4-201ENST00000414733 161 ntBASIC5.09□□□□□ -1.59
COL18A1P39060 AL035423.1-201ENST00000420331 213 ntBASIC5.09□□□□□ -1.59
COL18A1P39060 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL18A1P39060 HMGB1P37-201ENST00000439613 609 ntBASIC5.09□□□□□ -1.59
COL18A1P39060 GEMIN8P3-201ENST00000445417 720 ntBASIC5.09□□□□□ -1.59
COL18A1P39060 FTH1P25-201ENST00000447665 469 ntBASIC5.09□□□□□ -1.59
COL18A1P39060 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC5.09□□□□□ -1.59
COL18A1P39060 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC5.09□□□□□ -1.59
COL18A1P39060 USP9YP2-201ENST00000504503 1000 ntBASIC5.09□□□□□ -1.59
COL18A1P39060 USP9YP1-201ENST00000513521 1002 ntBASIC5.09□□□□□ -1.59
COL18A1P39060 AC016550.3-201ENST00000515706 767 ntBASIC5.09□□□□□ -1.59
COL18A1P39060 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC5.09□□□□□ -1.59
COL18A1P39060 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC5.09□□□□□ -1.59
COL18A1P39060 AC106782.4-201ENST00000568264 210 ntBASIC5.09□□□□□ -1.59
COL18A1P39060 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL18A1P39060 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC5.09□□□□□ -1.59
COL18A1P39060 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL18A1P39060 AC004656.1-201ENST00000568479 4951 ntBASIC5.09□□□□□ -1.59
COL18A1P39060 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
COL18A1P39060 AC083899.2-201ENST00000423285 1376 ntBASIC5.09□□□□□ -1.59
COL18A1P39060 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
COL18A1P39060 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.6
COL18A1P39060 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC5.09□□□□□ -1.6
COL18A1P39060 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC5.09□□□□□ -1.6
COL18A1P39060 AC008802.1-201ENST00000519121 791 ntBASIC5.09□□□□□ -1.6
COL18A1P39060 DPPA3P2-201ENST00000553589 478 ntBASIC5.09□□□□□ -1.6
COL18A1P39060 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC5.09□□□□□ -1.6
COL18A1P39060 AC092354.2-201ENST00000607786 514 ntBASIC5.09□□□□□ -1.6
COL18A1P39060 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
COL18A1P39060 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL18A1P39060 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
COL18A1P39060 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
COL18A1P39060 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL18A1P39060 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL18A1P39060 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC5.08□□□□□ -1.6
COL18A1P39060 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC5.08□□□□□ -1.6
COL18A1P39060 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
COL18A1P39060 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC5.08□□□□□ -1.6
COL18A1P39060 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC5.08□□□□□ -1.6
COL18A1P39060 AC005000.2-201ENST00000605468 310 ntBASIC5.08□□□□□ -1.6
COL18A1P39060 5S_rRNA.16-201ENST00000612928 119 ntBASIC5.08□□□□□ -1.6
COL18A1P39060 TEX41-265ENST00000627785 704 ntTSL 5 BASIC5.08□□□□□ -1.6
COL18A1P39060 TEX41-280ENST00000629185 591 ntTSL 5 BASIC5.08□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms