Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
HOXC9P31274 VN1R48P-201ENST00000448149 1036 ntBASIC5.51□□□□□ -1.53
HOXC9P31274 RAB28P3-201ENST00000448325 597 ntBASIC5.51□□□□□ -1.53
HOXC9P31274 AL500522.2-201ENST00000448562 343 ntBASIC5.51□□□□□ -1.53
HOXC9P31274 BUD31P2-201ENST00000449374 300 ntBASIC5.51□□□□□ -1.53
HOXC9P31274 MTND2P30-201ENST00000456663 382 ntBASIC5.51□□□□□ -1.53
HOXC9P31274 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC5.51□□□□□ -1.53
HOXC9P31274 CR383656.1-201ENST00000484916 377 ntBASIC5.51□□□□□ -1.53
HOXC9P31274 RPS4XP15-201ENST00000489210 795 ntBASIC5.51□□□□□ -1.53
HOXC9P31274 AC108145.1-201ENST00000503770 153 ntBASIC5.51□□□□□ -1.53
HOXC9P31274 AC067904.2-201ENST00000517322 1283 ntBASIC5.51□□□□□ -1.53
HOXC9P31274 LSM3P2-201ENST00000551246 273 ntBASIC5.51□□□□□ -1.53
HOXC9P31274 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC5.51□□□□□ -1.53
HOXC9P31274 AC120057.2-201ENST00000571520 271 ntBASIC5.51□□□□□ -1.53
HOXC9P31274 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC5.51□□□□□ -1.53
HOXC9P31274 AL133247.2-201ENST00000603236 482 ntBASIC5.51□□□□□ -1.53
HOXC9P31274 AL355802.4-201ENST00000607635 548 ntBASIC5.51□□□□□ -1.53
HOXC9P31274 AP003499.2-201ENST00000624100 483 ntBASIC5.51□□□□□ -1.53
HOXC9P31274 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC5.51□□□□□ -1.53
HOXC9P31274 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC5.51□□□□□ -1.53
HOXC9P31274 AP000542.2-201ENST00000623199 6179 ntBASIC5.51□□□□□ -1.53
HOXC9P31274 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
HOXC9P31274 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
HOXC9P31274 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
HOXC9P31274 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC5.5□□□□□ -1.53
HOXC9P31274 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
HOXC9P31274 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
HOXC9P31274 SNORA71.3-201ENST00000362582 128 ntBASIC5.5□□□□□ -1.53
HOXC9P31274 RNA5SP124-201ENST00000362739 110 ntBASIC5.5□□□□□ -1.53
HOXC9P31274 RNU6-40P-201ENST00000384254 107 ntBASIC5.5□□□□□ -1.53
HOXC9P31274 PTMAP2-201ENST00000397627 327 ntBASIC5.5□□□□□ -1.53
HOXC9P31274 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC5.5□□□□□ -1.53
HOXC9P31274 MAP1LC3BP1-201ENST00000417653 379 ntBASIC5.5□□□□□ -1.53
HOXC9P31274 AL161631.1-201ENST00000417933 486 ntBASIC5.5□□□□□ -1.53
HOXC9P31274 UBTFL3-201ENST00000418934 1024 ntBASIC5.5□□□□□ -1.53
HOXC9P31274 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC5.5□□□□□ -1.53
HOXC9P31274 GCA-203ENST00000429691 824 ntTSL 3 BASIC5.5□□□□□ -1.53
HOXC9P31274 AC018644.1-201ENST00000429934 551 ntBASIC5.5□□□□□ -1.53
HOXC9P31274 RPS4XP4-201ENST00000443195 763 ntBASIC5.5□□□□□ -1.53
HOXC9P31274 VN1R34P-201ENST00000447387 883 ntBASIC5.5□□□□□ -1.53
HOXC9P31274 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC5.5□□□□□ -1.53
HOXC9P31274 AL591473.1-201ENST00000464297 313 ntBASIC5.5□□□□□ -1.53
HOXC9P31274 RPL23AP65-201ENST00000475608 468 ntBASIC5.5□□□□□ -1.53
HOXC9P31274 UBTFL6-201ENST00000477929 1024 ntBASIC5.5□□□□□ -1.53
HOXC9P31274 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC5.5□□□□□ -1.53
HOXC9P31274 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC5.5□□□□□ -1.53
HOXC9P31274 KRT19P6-201ENST00000510983 209 ntBASIC5.5□□□□□ -1.53
HOXC9P31274 RNU6-889P-201ENST00000517189 103 ntBASIC5.5□□□□□ -1.53
HOXC9P31274 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
HOXC9P31274 CKS1BP1-201ENST00000555221 240 ntBASIC5.5□□□□□ -1.53
HOXC9P31274 AC016839.1-201ENST00000578162 867 ntBASIC5.5□□□□□ -1.53
HOXC9P31274 MIR5684-201ENST00000585074 65 ntBASIC5.5□□□□□ -1.53
HOXC9P31274 MIMT1-201ENST00000597105 1050 ntBASIC5.5□□□□□ -1.53
HOXC9P31274 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC5.5□□□□□ -1.53
HOXC9P31274 AC090912.3-201ENST00000609775 533 ntBASIC5.5□□□□□ -1.53
HOXC9P31274 AC140113.4-201ENST00000622087 222 ntBASIC5.5□□□□□ -1.53
HOXC9P31274 AC079298.2-201ENST00000623885 459 ntBASIC5.5□□□□□ -1.53
HOXC9P31274 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
HOXC9P31274 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
HOXC9P31274 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
HOXC9P31274 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
HOXC9P31274 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
HOXC9P31274 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC5.49□□□□□ -1.53
HOXC9P31274 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
HOXC9P31274 AC011503.2-201ENST00000594230 1500 ntBASIC5.49□□□□□ -1.53
HOXC9P31274 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
HOXC9P31274 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
HOXC9P31274 RNU6-213P-201ENST00000384051 104 ntBASIC5.49□□□□□ -1.53
HOXC9P31274 RNU6ATAC-201ENST00000408749 126 ntBASIC5.49□□□□□ -1.53
HOXC9P31274 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.49□□□□□ -1.53
HOXC9P31274 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC5.49□□□□□ -1.53
HOXC9P31274 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC5.49□□□□□ -1.53
HOXC9P31274 MTND2P21-201ENST00000436242 1042 ntBASIC5.49□□□□□ -1.53
HOXC9P31274 ZNF736P11Y-201ENST00000442535 1213 ntBASIC5.49□□□□□ -1.53
HOXC9P31274 ZNF736P12Y-201ENST00000443152 1243 ntBASIC5.49□□□□□ -1.53
HOXC9P31274 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC5.49□□□□□ -1.53
HOXC9P31274 AL358232.1-201ENST00000448030 501 ntBASIC5.49□□□□□ -1.53
HOXC9P31274 ZNF736P4Y-201ENST00000454995 1243 ntBASIC5.49□□□□□ -1.53
HOXC9P31274 RPL7P1-201ENST00000468161 747 ntBASIC5.49□□□□□ -1.53
HOXC9P31274 RPL7P9-201ENST00000468715 747 ntBASIC5.49□□□□□ -1.53
HOXC9P31274 GAPDHP36-201ENST00000480688 918 ntBASIC5.49□□□□□ -1.53
HOXC9P31274 AC110792.1-201ENST00000491826 472 ntBASIC5.49□□□□□ -1.53
HOXC9P31274 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC5.49□□□□□ -1.53
HOXC9P31274 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC5.49□□□□□ -1.53
HOXC9P31274 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
HOXC9P31274 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC5.49□□□□□ -1.53
HOXC9P31274 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC5.49□□□□□ -1.53
HOXC9P31274 AC110743.1-201ENST00000584870 478 ntBASIC5.49□□□□□ -1.53
HOXC9P31274 AC107982.3-201ENST00000584957 985 ntBASIC5.49□□□□□ -1.53
HOXC9P31274 AC114878.2-201ENST00000604863 1251 ntBASIC5.49□□□□□ -1.53
HOXC9P31274 AC092953.2-201ENST00000608000 699 ntBASIC5.49□□□□□ -1.53
HOXC9P31274 AC097505.1-201ENST00000610199 565 ntBASIC5.49□□□□□ -1.53
HOXC9P31274 MIR6868-201ENST00000611215 58 ntBASIC5.49□□□□□ -1.53
HOXC9P31274 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC5.49□□□□□ -1.53
HOXC9P31274 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
HOXC9P31274 AL512283.1-201ENST00000606756 1384 ntBASIC5.49□□□□□ -1.53
HOXC9P31274 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
HOXC9P31274 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
HOXC9P31274 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
HOXC9P31274 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC5.48□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms