Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 SNORA63.7-201ENST00000365579 123 ntBASIC6.38□□□□□ -1.39
MSX1P28360 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
MSX1P28360 ST3GAL3-212ENST00000372362 468 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
MSX1P28360 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
MSX1P28360 Y_RNA.557-201ENST00000384680 107 ntBASIC6.38□□□□□ -1.39
MSX1P28360 AC092642.1-201ENST00000392417 425 ntBASIC6.38□□□□□ -1.39
MSX1P28360 AL096800.1-201ENST00000405326 893 ntBASIC6.38□□□□□ -1.39
MSX1P28360 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
MSX1P28360 MIR548F5-201ENST00000408421 86 ntBASIC6.38□□□□□ -1.39
MSX1P28360 RNU2-3P-201ENST00000410144 191 ntBASIC6.38□□□□□ -1.39
MSX1P28360 RN7SKP268-201ENST00000411107 316 ntBASIC6.38□□□□□ -1.39
MSX1P28360 AC074085.1-201ENST00000413598 418 ntBASIC6.38□□□□□ -1.39
MSX1P28360 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC6.38□□□□□ -1.39
MSX1P28360 AL451164.1-201ENST00000417149 390 ntTSL 3 BASIC6.38□□□□□ -1.39
MSX1P28360 ETDA-201ENST00000427686 607 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
MSX1P28360 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC6.38□□□□□ -1.39
MSX1P28360 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC6.38□□□□□ -1.39
MSX1P28360 PRPF38AP2-201ENST00000438179 851 ntBASIC6.38□□□□□ -1.39
MSX1P28360 AC234771.4-201ENST00000441416 730 ntBASIC6.38□□□□□ -1.39
MSX1P28360 AL445307.1-201ENST00000446476 602 ntTSL 3 BASIC6.38□□□□□ -1.39
MSX1P28360 AL133319.1-201ENST00000447848 777 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
MSX1P28360 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC6.38□□□□□ -1.39
MSX1P28360 HMGB1P7-201ENST00000450921 612 ntBASIC6.38□□□□□ -1.39
MSX1P28360 AL133351.3-201ENST00000454998 193 ntBASIC6.38□□□□□ -1.39
MSX1P28360 AC026410.2-201ENST00000460281 156 ntBASIC6.38□□□□□ -1.39
MSX1P28360 PGAP2-210ENST00000464441 699 ntTSL 5 BASIC6.38□□□□□ -1.39
MSX1P28360 AC021074.2-201ENST00000468434 172 ntBASIC6.38□□□□□ -1.39
MSX1P28360 AC044810.1-201ENST00000480271 711 ntBASIC6.38□□□□□ -1.39
MSX1P28360 RN7SL350P-201ENST00000492591 299 ntBASIC6.38□□□□□ -1.39
MSX1P28360 RPL19P11-201ENST00000495944 589 ntBASIC6.38□□□□□ -1.39
MSX1P28360 AC109481.1-201ENST00000509173 282 ntBASIC6.38□□□□□ -1.39
MSX1P28360 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
MSX1P28360 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC6.38□□□□□ -1.39
MSX1P28360 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC6.38□□□□□ -1.39
MSX1P28360 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC6.38□□□□□ -1.39
MSX1P28360 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC6.38□□□□□ -1.39
MSX1P28360 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC6.38□□□□□ -1.39
MSX1P28360 PTP4A1P6-201ENST00000531034 478 ntBASIC6.38□□□□□ -1.39
MSX1P28360 ST3GAL3-232ENST00000531451 420 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
MSX1P28360 AP002404.1-201ENST00000532005 451 ntBASIC6.38□□□□□ -1.39
MSX1P28360 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC6.38□□□□□ -1.39
MSX1P28360 PCED1B-AS1-202ENST00000547600 523 ntTSL 3 BASIC6.38□□□□□ -1.39
MSX1P28360 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
MSX1P28360 AL135978.1-201ENST00000553618 1266 ntBASIC6.38□□□□□ -1.39
MSX1P28360 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC6.38□□□□□ -1.39
MSX1P28360 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC6.38□□□□□ -1.39
MSX1P28360 AL356432.3-201ENST00000568952 465 ntBASIC6.38□□□□□ -1.39
MSX1P28360 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC6.38□□□□□ -1.39
MSX1P28360 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC6.38□□□□□ -1.39
MSX1P28360 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC6.38□□□□□ -1.39
MSX1P28360 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC6.38□□□□□ -1.39
MSX1P28360 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC6.38□□□□□ -1.39
MSX1P28360 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
MSX1P28360 SLC3A1-206ENST00000409740 1418 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
MSX1P28360 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC6.38□□□□□ -1.39
MSX1P28360 GPR89A-203ENST00000462900 1527 ntTSL 2 BASIC6.38□□□□□ -1.39
MSX1P28360 VPS35P1-201ENST00000563400 1518 ntBASIC6.38□□□□□ -1.39
MSX1P28360 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
MSX1P28360 AC011493.1-201ENST00000596753 1632 ntBASIC6.38□□□□□ -1.39
MSX1P28360 AC010168.2-201ENST00000562691 5428 ntBASIC6.38□□□□□ -1.39
MSX1P28360 PAIP1-202ENST00000338972 1814 ntAPPRIS P3 TSL 5 BASIC6.38□□□□□ -1.39
MSX1P28360 BPIFC-203ENST00000397452 2091 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
MSX1P28360 TBC1D23-205ENST00000475134 2074 ntTSL 5 BASIC6.38□□□□□ -1.39
MSX1P28360 ZNF714-202ENST00000456283 6812 ntAPPRIS P1 TSL 2 BASIC6.38□□□□□ -1.39
MSX1P28360 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC6.38□□□□□ -1.39
MSX1P28360 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC6.38□□□□□ -1.39
MSX1P28360 CEP97-206ENST00000494050 2870 ntAPPRIS ALT2 TSL 2 BASIC6.38□□□□□ -1.39
MSX1P28360 ATAD1-202ENST00000328142 2939 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
MSX1P28360 BRD8-204ENST00000411594 2967 ntTSL 5 BASIC6.38□□□□□ -1.39
MSX1P28360 LRRC37B-203ENST00000394713 3025 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
MSX1P28360 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
MSX1P28360 CNOT4-205ENST00000423368 3297 ntAPPRIS ALT1 TSL 1 (best) BASIC6.38□□□□□ -1.39
MSX1P28360 CTNNA1-244ENST00000627109 3831 ntTSL 5 BASIC6.37□□□□□ -1.39
MSX1P28360 EHBP1-203ENST00000405289 3591 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
MSX1P28360 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSX1P28360 AC016251.2-201ENST00000623393 3089 ntBASIC6.37□□□□□ -1.39
MSX1P28360 AL450327.1-201ENST00000430931 2632 ntTSL 5 BASIC6.37□□□□□ -1.39
MSX1P28360 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSX1P28360 AC090337.1-201ENST00000579651 2074 ntBASIC6.37□□□□□ -1.39
MSX1P28360 PTPRR-202ENST00000342084 2037 ntAPPRIS ALT2 TSL 2 BASIC6.37□□□□□ -1.39
MSX1P28360 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC6.37□□□□□ -1.39
MSX1P28360 TCP11X2-202ENST00000453326 1747 ntAPPRIS P1 TSL 2 BASIC6.37□□□□□ -1.39
MSX1P28360 TCP11X1-201ENST00000597070 1747 ntTSL 2 BASIC6.37□□□□□ -1.39
MSX1P28360 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
MSX1P28360 AC007012.2-201ENST00000623206 1676 ntBASIC6.37□□□□□ -1.39
MSX1P28360 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC6.37□□□□□ -1.39
MSX1P28360 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSX1P28360 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
MSX1P28360 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC6.37□□□□□ -1.39
MSX1P28360 AC121761.1-201ENST00000547326 1482 ntTSL 3 BASIC6.37□□□□□ -1.39
MSX1P28360 STON2-206ENST00000555447 4302 ntAPPRIS ALT2 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSX1P28360 AC138915.4-201ENST00000565549 4147 ntBASIC6.37□□□□□ -1.39
MSX1P28360 RNU4-48P-201ENST00000365559 182 ntBASIC6.37□□□□□ -1.39
MSX1P28360 Y_RNA.414-201ENST00000384011 101 ntBASIC6.37□□□□□ -1.39
MSX1P28360 SNORD3H-201ENST00000384486 214 ntBASIC6.37□□□□□ -1.39
MSX1P28360 MIR191-201ENST00000384873 92 ntBASIC6.37□□□□□ -1.39
MSX1P28360 IGKC-201ENST00000390237 523 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
MSX1P28360 LDHAP5-201ENST00000394996 622 ntBASIC6.37□□□□□ -1.39
MSX1P28360 AL136100.1-201ENST00000407696 330 ntBASIC6.37□□□□□ -1.39
MSX1P28360 SNORA11.3-201ENST00000408471 128 ntBASIC6.37□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms