Protein–RNA interactions for Protein: P31277

HOXD11, Homeobox protein Hox-D11, humanhuman

Predicted RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD11P31277 AL117372.1-201ENST00000613711 459 ntTSL 4 BASIC9.03□□□□□ -0.96
HOXD11P31277 AC134878.1-201ENST00000619901 243 ntBASIC9.03□□□□□ -0.96
HOXD11P31277 LINC01646-202ENST00000634256 1107 ntTSL 5 BASIC9.03□□□□□ -0.96
HOXD11P31277 ZNF569-201ENST00000316950 4061 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
HOXD11P31277 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC9.03□□□□□ -0.96
HOXD11P31277 RBMXL1-202ENST00000399794 5084 ntAPPRIS P1 TSL 2 BASIC9.03□□□□□ -0.96
HOXD11P31277 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC9.03□□□□□ -0.96
HOXD11P31277 NAA11-201ENST00000286794 2014 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
HOXD11P31277 PDE1A-203ENST00000409365 2034 ntTSL 5 BASIC9.03□□□□□ -0.96
HOXD11P31277 OXGR1-201ENST00000298440 2285 ntAPPRIS P1 TSL 2 BASIC9.03□□□□□ -0.96
HOXD11P31277 PLEKHS1-203ENST00000369309 2534 ntTSL 5 BASIC9.03□□□□□ -0.96
HOXD11P31277 GRM1-207ENST00000507907 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC9.03□□□□□ -0.96
HOXD11P31277 NOS2-201ENST00000313735 4176 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
HOXD11P31277 SLFN11-201ENST00000308377 4910 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
HOXD11P31277 LINC00598-207ENST00000616706 2088 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
HOXD11P31277 KIAA0930-202ENST00000336156 8119 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
HOXD11P31277 HERC2P8-202ENST00000564334 3705 ntBASIC9.03□□□□□ -0.96
HOXD11P31277 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
HOXD11P31277 CX3CR1-206ENST00000542107 3215 ntAPPRIS P1 TSL 4 BASIC9.03□□□□□ -0.96
HOXD11P31277 ZFYVE9-204ENST00000371591 4874 ntAPPRIS P4 TSL 1 (best) BASIC9.03□□□□□ -0.96
HOXD11P31277 DOPEY2-202ENST00000399151 7685 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.96
HOXD11P31277 FREM1-203ENST00000380894 2481 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
HOXD11P31277 ADGRF3-203ENST00000421160 3353 ntAPPRIS ALT2 TSL 2 BASIC9.03□□□□□ -0.96
HOXD11P31277 ZG16-201ENST00000400752 3132 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.96
HOXD11P31277 BPNT1-203ENST00000414869 2357 ntTSL 2 BASIC9.02□□□□□ -0.96
HOXD11P31277 PTGS1-207ENST00000619306 5051 ntAPPRIS ALT2 TSL 5 BASIC9.02□□□□□ -0.96
HOXD11P31277 FNBP1L-202ENST00000271234 4212 ntAPPRIS P4 TSL 5 BASIC9.02□□□□□ -0.96
HOXD11P31277 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC9.02□□□□□ -0.96
HOXD11P31277 OR2M4-202ENST00000641868 5934 ntAPPRIS P1 BASIC9.02□□□□□ -0.97
HOXD11P31277 DUSP3-201ENST00000226004 4110 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
HOXD11P31277 PXYLP1-204ENST00000504264 1773 ntTSL 2 BASIC9.02□□□□□ -0.97
HOXD11P31277 ASH1L-201ENST00000368346 11942 ntAPPRIS ALT1 TSL 1 (best) BASIC9.02□□□□□ -0.97
HOXD11P31277 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
HOXD11P31277 CLDN2-201ENST00000336803 2959 ntAPPRIS P1 TSL 2 BASIC9.02□□□□□ -0.97
HOXD11P31277 CSF2RA-209ENST00000432318 1940 ntAPPRIS P3 TSL 1 (best) BASIC9.02□□□□□ -0.97
HOXD11P31277 FYB1-209ENST00000512982 2747 ntAPPRIS ALT2 TSL 2 BASIC9.02□□□□□ -0.97
HOXD11P31277 MTHFD2-201ENST00000394053 4456 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
HOXD11P31277 HTR3B-202ENST00000537778 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC9.02□□□□□ -0.97
HOXD11P31277 VPREB1-201ENST00000302273 626 ntAPPRIS ALT2 TSL 3 BASIC9.02□□□□□ -0.97
HOXD11P31277 Y_RNA.221-201ENST00000364248 96 ntBASIC9.02□□□□□ -0.97
HOXD11P31277 RNA5SP149-201ENST00000364952 92 ntBASIC9.02□□□□□ -0.97
HOXD11P31277 RPL12P47-201ENST00000406185 127 ntBASIC9.02□□□□□ -0.97
HOXD11P31277 SNORD88C-201ENST00000408061 91 ntBASIC9.02□□□□□ -0.97
HOXD11P31277 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC9.02□□□□□ -0.97
HOXD11P31277 AC080129.1-201ENST00000457815 406 ntTSL 3 BASIC9.02□□□□□ -0.97
HOXD11P31277 AC092349.1-201ENST00000504903 310 ntBASIC9.02□□□□□ -0.97
HOXD11P31277 SCARNA8-201ENST00000515924 131 ntBASIC9.02□□□□□ -0.97
HOXD11P31277 HHLA3-207ENST00000531950 541 ntAPPRIS ALT2 TSL 5 BASIC9.02□□□□□ -0.97
HOXD11P31277 IGBP1P1-201ENST00000554337 1009 ntBASIC9.02□□□□□ -0.97
HOXD11P31277 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC9.02□□□□□ -0.97
HOXD11P31277 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC9.02□□□□□ -0.97
HOXD11P31277 AC012186.1-201ENST00000566702 398 ntBASIC9.02□□□□□ -0.97
HOXD11P31277 AC006547.1-208ENST00000598339 805 ntTSL 5 BASIC9.02□□□□□ -0.97
HOXD11P31277 AC006547.1-211ENST00000609191 828 ntTSL 5 BASIC9.02□□□□□ -0.97
HOXD11P31277 MGST2-207ENST00000616265 1278 ntAPPRIS P1 TSL 4 BASIC9.02□□□□□ -0.97
HOXD11P31277 ITIH3-211ENST00000621946 3038 ntTSL 1 (best) BASIC9.02□□□□□ -0.97
HOXD11P31277 FAT3-206ENST00000533797 7894 ntTSL 2 BASIC9.02□□□□□ -0.97
HOXD11P31277 RACGAP1-201ENST00000312377 3073 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
HOXD11P31277 ERBB3-221ENST00000553131 3237 ntTSL 2 BASIC9.02□□□□□ -0.97
HOXD11P31277 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC9.02□□□□□ -0.97
HOXD11P31277 NR1I2-203ENST00000466380 4306 ntAPPRIS ALT2 TSL 1 (best) BASIC9.02□□□□□ -0.97
HOXD11P31277 ABCC11-202ENST00000356608 4612 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
HOXD11P31277 L3MBTL4-203ENST00000400105 3546 ntAPPRIS P1 TSL 2 BASIC9.02□□□□□ -0.97
HOXD11P31277 AC009108.3-201ENST00000602739 3515 ntBASIC9.02□□□□□ -0.97
HOXD11P31277 TMEM267-202ENST00000500337 2950 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
HOXD11P31277 TMEM246-201ENST00000374847 4223 ntAPPRIS P1 TSL 3 BASIC9.02□□□□□ -0.97
HOXD11P31277 DEPDC5-202ENST00000382112 5363 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
HOXD11P31277 BIVM-ERCC5-201ENST00000602836 5143 ntAPPRIS P5 TSL 1 (best) BASIC9.02□□□□□ -0.97
HOXD11P31277 BTN3A3-201ENST00000244519 3002 ntAPPRIS P4 TSL 1 (best) BASIC9.02□□□□□ -0.97
HOXD11P31277 SLC24A1-211ENST00000544319 3169 ntAPPRIS ALT2 TSL 5 BASIC9.02□□□□□ -0.97
HOXD11P31277 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC9.02□□□□□ -0.97
HOXD11P31277 SUPT20H-205ENST00000464744 2625 ntAPPRIS P3 TSL 2 BASIC9.01□□□□□ -0.97
HOXD11P31277 PAK3-212ENST00000519681 2638 ntTSL 5 BASIC9.01□□□□□ -0.97
HOXD11P31277 CSNK1G1-201ENST00000303052 8179 ntAPPRIS P2 TSL 1 (best) BASIC9.01□□□□□ -0.97
HOXD11P31277 PAX6-231ENST00000606377 6901 ntAPPRIS P4 TSL 5 BASIC9.01□□□□□ -0.97
HOXD11P31277 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC9.01□□□□□ -0.97
HOXD11P31277 SH3GLB1-203ENST00000535010 6227 ntTSL 2 BASIC9.01□□□□□ -0.97
HOXD11P31277 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
HOXD11P31277 AC026887.1-201ENST00000624657 2985 ntBASIC9.01□□□□□ -0.97
HOXD11P31277 BABAM2-203ENST00000361704 1686 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
HOXD11P31277 UVSSA-202ENST00000389851 12605 ntAPPRIS P2 TSL 1 (best) BASIC9.01□□□□□ -0.97
HOXD11P31277 HLTF-202ENST00000392912 3896 ntAPPRIS P3 TSL 1 (best) BASIC9.01□□□□□ -0.97
HOXD11P31277 EFHC1-226ENST00000636954 2129 ntTSL 2 BASIC9.01□□□□□ -0.97
HOXD11P31277 TRAK2-201ENST00000332624 6510 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
HOXD11P31277 CERS6-AS1-201ENST00000425636 2890 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
HOXD11P31277 BFAR-201ENST00000261658 3039 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
HOXD11P31277 SH3GL3-201ENST00000324537 2012 ntTSL 2 BASIC9.01□□□□□ -0.97
HOXD11P31277 MIR412-201ENST00000362142 91 ntBASIC9.01□□□□□ -0.97
HOXD11P31277 RNU6-356P-201ENST00000384140 107 ntBASIC9.01□□□□□ -0.97
HOXD11P31277 DIDO1-206ENST00000395340 7551 ntAPPRIS P3 TSL 1 (best) BASIC9.01□□□□□ -0.97
HOXD11P31277 PRELID1P1-201ENST00000403549 660 ntBASIC9.01□□□□□ -0.97
HOXD11P31277 CTSLP8-201ENST00000413075 967 ntBASIC9.01□□□□□ -0.97
HOXD11P31277 AC010145.1-201ENST00000422415 516 ntTSL 5 BASIC9.01□□□□□ -0.97
HOXD11P31277 AL158156.1-201ENST00000422509 473 ntBASIC9.01□□□□□ -0.97
HOXD11P31277 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC9.01□□□□□ -0.97
HOXD11P31277 AC009945.1-201ENST00000453188 298 ntBASIC9.01□□□□□ -0.97
HOXD11P31277 PSPC1P2-201ENST00000455130 225 ntBASIC9.01□□□□□ -0.97
HOXD11P31277 RPL34P22-201ENST00000468193 318 ntBASIC9.01□□□□□ -0.97
HOXD11P31277 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC9.01□□□□□ -0.97
HOXD11P31277 AC073913.2-201ENST00000541512 145 ntBASIC9.01□□□□□ -0.97
Retrieved 100 of 98,524 protein–RNA pairs in 252.1 ms