Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.91□□□□□ -1.62
BRCA1P38398 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
BRCA1P38398 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.91□□□□□ -1.62
BRCA1P38398 AC023389.2-201ENST00000580031 955 ntBASIC4.91□□□□□ -1.62
BRCA1P38398 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC4.91□□□□□ -1.62
BRCA1P38398 AC008966.2-201ENST00000606157 453 ntBASIC4.91□□□□□ -1.62
BRCA1P38398 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.91□□□□□ -1.62
BRCA1P38398 TEX41-280ENST00000629185 591 ntTSL 5 BASIC4.91□□□□□ -1.62
BRCA1P38398 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
BRCA1P38398 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC4.91□□□□□ -1.62
BRCA1P38398 AP004289.2-201ENST00000444413 1457 ntBASIC4.91□□□□□ -1.62
BRCA1P38398 YES1-203ENST00000577961 4554 ntTSL 5 BASIC4.91□□□□□ -1.62
BRCA1P38398 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
BRCA1P38398 AC083899.2-201ENST00000423285 1376 ntBASIC4.91□□□□□ -1.62
BRCA1P38398 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
BRCA1P38398 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC4.91□□□□□ -1.62
BRCA1P38398 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.9□□□□□ -1.62
BRCA1P38398 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.9□□□□□ -1.62
BRCA1P38398 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.9□□□□□ -1.62
BRCA1P38398 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
BRCA1P38398 AL591503.2-201ENST00000442314 1005 ntBASIC4.9□□□□□ -1.62
BRCA1P38398 CYCSP53-201ENST00000455540 265 ntBASIC4.9□□□□□ -1.62
BRCA1P38398 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC4.9□□□□□ -1.62
BRCA1P38398 AC090136.1-201ENST00000520009 240 ntBASIC4.9□□□□□ -1.62
BRCA1P38398 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC4.9□□□□□ -1.62
BRCA1P38398 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.9□□□□□ -1.62
BRCA1P38398 AC007458.1-201ENST00000542812 373 ntBASIC4.9□□□□□ -1.62
BRCA1P38398 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
BRCA1P38398 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC4.9□□□□□ -1.62
BRCA1P38398 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC4.9□□□□□ -1.62
BRCA1P38398 AL137843.1-201ENST00000605078 385 ntBASIC4.9□□□□□ -1.62
BRCA1P38398 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC4.9□□□□□ -1.62
BRCA1P38398 AL138721.1-201ENST00000616756 179 ntBASIC4.9□□□□□ -1.62
BRCA1P38398 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.9□□□□□ -1.62
BRCA1P38398 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
BRCA1P38398 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.62
BRCA1P38398 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC4.9□□□□□ -1.62
BRCA1P38398 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
BRCA1P38398 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.9□□□□□ -1.62
BRCA1P38398 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
BRCA1P38398 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.9□□□□□ -1.63
BRCA1P38398 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
BRCA1P38398 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC4.9□□□□□ -1.63
BRCA1P38398 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
BRCA1P38398 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC4.9□□□□□ -1.63
BRCA1P38398 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC4.9□□□□□ -1.63
BRCA1P38398 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
BRCA1P38398 AL031595.2-201ENST00000624215 19071 ntBASIC4.9□□□□□ -1.63
BRCA1P38398 ESD-201ENST00000378697 1079 ntTSL 5 BASIC4.9□□□□□ -1.63
BRCA1P38398 SNORD66.1-201ENST00000391230 76 ntBASIC4.9□□□□□ -1.63
BRCA1P38398 AL592291.1-201ENST00000403830 352 ntBASIC4.9□□□□□ -1.63
BRCA1P38398 RPS26P4-201ENST00000431743 355 ntBASIC4.9□□□□□ -1.63
BRCA1P38398 AC092691.2-201ENST00000461787 803 ntBASIC4.9□□□□□ -1.63
BRCA1P38398 AC005726.1-201ENST00000494679 427 ntBASIC4.9□□□□□ -1.63
BRCA1P38398 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.9□□□□□ -1.63
BRCA1P38398 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC4.9□□□□□ -1.63
BRCA1P38398 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC4.9□□□□□ -1.63
BRCA1P38398 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC4.9□□□□□ -1.63
BRCA1P38398 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
BRCA1P38398 MIR5187-201ENST00000583479 76 ntBASIC4.9□□□□□ -1.63
BRCA1P38398 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC4.9□□□□□ -1.63
BRCA1P38398 AC091167.4-201ENST00000605079 184 ntBASIC4.9□□□□□ -1.63
BRCA1P38398 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.9□□□□□ -1.63
BRCA1P38398 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.9□□□□□ -1.63
BRCA1P38398 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
BRCA1P38398 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC4.89□□□□□ -1.63
BRCA1P38398 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC4.89□□□□□ -1.63
BRCA1P38398 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.89□□□□□ -1.63
BRCA1P38398 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
BRCA1P38398 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
BRCA1P38398 AL022393.1-201ENST00000625142 1677 ntBASIC4.89□□□□□ -1.63
BRCA1P38398 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
BRCA1P38398 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.89□□□□□ -1.63
BRCA1P38398 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
BRCA1P38398 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC4.89□□□□□ -1.63
BRCA1P38398 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
BRCA1P38398 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
BRCA1P38398 NAMPTP1-201ENST00000440465 2514 ntBASIC4.89□□□□□ -1.63
BRCA1P38398 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
BRCA1P38398 MTCO1P12-201ENST00000414273 1543 ntBASIC4.89□□□□□ -1.63
BRCA1P38398 RNU6-673P-201ENST00000365084 104 ntBASIC4.89□□□□□ -1.63
BRCA1P38398 SNORD3H-201ENST00000384486 214 ntBASIC4.89□□□□□ -1.63
BRCA1P38398 RNU6-233P-201ENST00000410845 141 ntBASIC4.89□□□□□ -1.63
BRCA1P38398 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC4.89□□□□□ -1.63
BRCA1P38398 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC4.89□□□□□ -1.63
BRCA1P38398 DCLRE1CP1-201ENST00000454630 470 ntBASIC4.89□□□□□ -1.63
BRCA1P38398 UBE2DNL-203ENST00000474922 222 ntBASIC4.89□□□□□ -1.63
BRCA1P38398 AC098799.1-201ENST00000504752 800 ntBASIC4.89□□□□□ -1.63
BRCA1P38398 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.89□□□□□ -1.63
BRCA1P38398 GNRHR2P1-201ENST00000555315 631 ntBASIC4.89□□□□□ -1.63
BRCA1P38398 AC027176.2-201ENST00000559166 746 ntBASIC4.89□□□□□ -1.63
BRCA1P38398 MIR4433B-201ENST00000581329 102 ntBASIC4.89□□□□□ -1.63
BRCA1P38398 AC012493.2-201ENST00000595083 291 ntBASIC4.89□□□□□ -1.63
BRCA1P38398 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC4.89□□□□□ -1.63
BRCA1P38398 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC4.89□□□□□ -1.63
BRCA1P38398 AC073530.2-201ENST00000623987 261 ntBASIC4.89□□□□□ -1.63
BRCA1P38398 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC4.89□□□□□ -1.63
BRCA1P38398 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.89□□□□□ -1.63
BRCA1P38398 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
BRCA1P38398 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms