Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC5.71□□□□□ -1.5
HLA-DOAP06340 AC034244.1-201ENST00000507687 207 ntBASIC5.71□□□□□ -1.5
HLA-DOAP06340 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC5.71□□□□□ -1.5
HLA-DOAP06340 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC5.71□□□□□ -1.5
HLA-DOAP06340 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC5.71□□□□□ -1.5
HLA-DOAP06340 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HLA-DOAP06340 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC5.71□□□□□ -1.5
HLA-DOAP06340 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC5.71□□□□□ -1.5
HLA-DOAP06340 AC023050.2-201ENST00000544968 387 ntBASIC5.71□□□□□ -1.5
HLA-DOAP06340 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.71□□□□□ -1.5
HLA-DOAP06340 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC5.71□□□□□ -1.5
HLA-DOAP06340 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC5.71□□□□□ -1.5
HLA-DOAP06340 AC090888.1-201ENST00000561335 1141 ntBASIC5.71□□□□□ -1.5
HLA-DOAP06340 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.71□□□□□ -1.5
HLA-DOAP06340 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC5.71□□□□□ -1.5
HLA-DOAP06340 AC068790.4-201ENST00000602474 263 ntBASIC5.71□□□□□ -1.5
HLA-DOAP06340 OR2AS2P-201ENST00000606902 342 ntBASIC5.71□□□□□ -1.5
HLA-DOAP06340 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
HLA-DOAP06340 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HLA-DOAP06340 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HLA-DOAP06340 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
HLA-DOAP06340 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
HLA-DOAP06340 AC007382.1-201ENST00000624376 2618 ntBASIC5.71□□□□□ -1.5
HLA-DOAP06340 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
HLA-DOAP06340 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HLA-DOAP06340 AL078595.2-201ENST00000605309 1780 ntBASIC5.7□□□□□ -1.5
HLA-DOAP06340 MTND4P10-201ENST00000446199 1363 ntBASIC5.7□□□□□ -1.5
HLA-DOAP06340 ALB-214ENST00000509063 1911 ntTSL 5 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HLA-DOAP06340 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 SMG1P6-201ENST00000532337 2930 ntBASIC5.7□□□□□ -1.5
HLA-DOAP06340 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
HLA-DOAP06340 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
HLA-DOAP06340 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HLA-DOAP06340 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
HLA-DOAP06340 SNORD116-9-201ENST00000384000 95 ntBASIC5.7□□□□□ -1.5
HLA-DOAP06340 SNORD116-3-201ENST00000384287 95 ntBASIC5.7□□□□□ -1.5
HLA-DOAP06340 SNORD116-7-201ENST00000384404 95 ntBASIC5.7□□□□□ -1.5
HLA-DOAP06340 SNORD116-5-201ENST00000384462 95 ntBASIC5.7□□□□□ -1.5
HLA-DOAP06340 RNA5SP332-201ENST00000391063 115 ntBASIC5.7□□□□□ -1.5
HLA-DOAP06340 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HLA-DOAP06340 AL136231.1-201ENST00000429407 730 ntBASIC5.7□□□□□ -1.5
HLA-DOAP06340 AC068287.1-201ENST00000430283 295 ntBASIC5.7□□□□□ -1.5
HLA-DOAP06340 RPS17P8-201ENST00000434525 335 ntBASIC5.7□□□□□ -1.5
HLA-DOAP06340 UBE2D3P1-201ENST00000436669 444 ntBASIC5.7□□□□□ -1.5
HLA-DOAP06340 AL008629.1-201ENST00000438615 184 ntBASIC5.7□□□□□ -1.5
HLA-DOAP06340 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 AC092685.1-201ENST00000447960 1243 ntBASIC5.7□□□□□ -1.5
HLA-DOAP06340 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 HMGB1P5-202ENST00000451497 985 ntBASIC5.7□□□□□ -1.5
HLA-DOAP06340 RN7SL558P-201ENST00000497468 299 ntBASIC5.7□□□□□ -1.5
HLA-DOAP06340 AC111000.3-201ENST00000508057 576 ntBASIC5.7□□□□□ -1.5
HLA-DOAP06340 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 RNU2-30P-201ENST00000516209 141 ntBASIC5.7□□□□□ -1.5
HLA-DOAP06340 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 MTCO1P49-201ENST00000523429 802 ntBASIC5.7□□□□□ -1.5
HLA-DOAP06340 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 AP001804.2-201ENST00000533932 910 ntBASIC5.7□□□□□ -1.5
HLA-DOAP06340 PYM1-205ENST00000547925 499 ntTSL 3 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 AL110118.1-201ENST00000553543 400 ntBASIC5.7□□□□□ -1.5
HLA-DOAP06340 MIR5699-201ENST00000578903 90 ntBASIC5.7□□□□□ -1.5
HLA-DOAP06340 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 NBR2-204ENST00000587322 63 ntBASIC5.7□□□□□ -1.5
HLA-DOAP06340 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 AC025175.1-201ENST00000606482 759 ntBASIC5.7□□□□□ -1.5
HLA-DOAP06340 TUSC7.1-201ENST00000610969 165 ntBASIC5.7□□□□□ -1.5
HLA-DOAP06340 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 GMFB-210ENST00000628554 639 ntTSL 4 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 RNF123-214ENST00000629802 207 ntTSL 5 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 AC007671.2-201ENST00000637344 619 ntBASIC5.7□□□□□ -1.5
HLA-DOAP06340 AC139713.2-210ENST00000641741 992 ntBASIC5.7□□□□□ -1.5
HLA-DOAP06340 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 AL442639.1-201ENST00000625030 1899 ntBASIC5.7□□□□□ -1.5
HLA-DOAP06340 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC5.7□□□□□ -1.5
HLA-DOAP06340 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
HLA-DOAP06340 TLK1P1-201ENST00000456760 2440 ntBASIC5.69□□□□□ -1.5
HLA-DOAP06340 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms