Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC092651.1-201ENST00000426110 312 ntBASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 TRAPPC2P5-201ENST00000426293 308 ntBASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 OFD1P12Y-201ENST00000427963 1207 ntBASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 NPM1P24-201ENST00000428039 894 ntBASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 MTND6P12-201ENST00000428247 522 ntBASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 AL022331.1-201ENST00000429025 477 ntBASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 RPL37P1-201ENST00000432310 284 ntBASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 RPS3AP38-201ENST00000435889 763 ntBASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 AC023271.1-201ENST00000445936 1090 ntBASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 RPL5P32-201ENST00000454085 879 ntBASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 RPS15AP1-201ENST00000457423 391 ntBASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 UBFD1P1-201ENST00000473259 814 ntBASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 AC006539.1-201ENST00000481419 501 ntBASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 AC004069.2-201ENST00000505438 1114 ntBASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 SNX5P1-201ENST00000505757 1041 ntBASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 snoU109.5-201ENST00000516231 132 ntBASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 IGLV3-30-201ENST00000524362 298 ntBASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 AL163952.1-202ENST00000569625 600 ntBASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 ANKRD36BP2-206ENST00000575193 1245 ntBASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 AC008521.2-201ENST00000591021 259 ntBASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 AC007786.3-201ENST00000615154 596 ntBASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 RN7SL544P-201ENST00000617232 284 ntBASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 RN7SL763P-201ENST00000620922 284 ntBASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 AC025048.6-202ENST00000627667 438 ntBASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 CR383658.2-201ENST00000547576 1525 ntBASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 AP004607.3-201ENST00000530354 3915 ntBASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
TRIM39Q9HCM9 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 AP005432.1-201ENST00000580891 3485 ntBASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 AL121657.1-201ENST00000327215 531 ntBASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 RNU6-251P-201ENST00000363235 104 ntBASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 RNU6-660P-201ENST00000364566 109 ntBASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 RN7SKP292-201ENST00000365522 317 ntBASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 GNG5P2-201ENST00000372054 207 ntBASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 AL031985.1-201ENST00000392713 418 ntBASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 AC073264.1-201ENST00000411508 416 ntBASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 NPM1P40-201ENST00000412758 733 ntBASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 AC007899.1-201ENST00000412776 775 ntBASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 CYCSP46-201ENST00000423569 204 ntBASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 B3GNT2P1-201ENST00000434960 952 ntBASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 AC092013.1-201ENST00000438795 332 ntBASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 AC012123.2-201ENST00000485809 248 ntBASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 RPS4XP15-201ENST00000489210 795 ntBASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 AC074255.1-201ENST00000511259 501 ntBASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 MTCYBP43-201ENST00000513621 740 ntBASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 AC116347.2-201ENST00000514912 523 ntBASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 AC022447.1-201ENST00000515358 464 ntBASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 SNORA70.11-201ENST00000515987 138 ntBASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 RNU6-583P-201ENST00000516012 92 ntBASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 SNORA70.13-201ENST00000516116 138 ntBASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 AC021678.3-201ENST00000517893 476 ntBASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 AC139365.2-201ENST00000517972 253 ntBASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 AP002963.1-201ENST00000530590 184 ntBASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 AC022880.1-201ENST00000534017 973 ntBASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC5.72□□□□□ -1.49
TRIM39Q9HCM9 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 125.9 ms