Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC3.99□□□□□ -1.77
SKA3Q8IX90 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC3.99□□□□□ -1.77
SKA3Q8IX90 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
SKA3Q8IX90 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
SKA3Q8IX90 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
SKA3Q8IX90 RNU6ATAC5P-201ENST00000388104 126 ntBASIC3.99□□□□□ -1.77
SKA3Q8IX90 MIR921-201ENST00000401133 56 ntBASIC3.99□□□□□ -1.77
SKA3Q8IX90 RPS16P5-201ENST00000406501 404 ntBASIC3.99□□□□□ -1.77
SKA3Q8IX90 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC3.99□□□□□ -1.77
SKA3Q8IX90 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC3.99□□□□□ -1.77
SKA3Q8IX90 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
SKA3Q8IX90 AL391219.1-201ENST00000422570 483 ntBASIC3.99□□□□□ -1.77
SKA3Q8IX90 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
SKA3Q8IX90 RPL23AP93-201ENST00000440847 484 ntBASIC3.99□□□□□ -1.77
SKA3Q8IX90 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC3.99□□□□□ -1.77
SKA3Q8IX90 AC099063.2-201ENST00000446360 662 ntBASIC3.99□□□□□ -1.77
SKA3Q8IX90 RNU6ATAC28P-201ENST00000459249 118 ntBASIC3.99□□□□□ -1.77
SKA3Q8IX90 RPL23AP72-201ENST00000492447 435 ntBASIC3.99□□□□□ -1.77
SKA3Q8IX90 CDH12P2-201ENST00000504393 298 ntBASIC3.99□□□□□ -1.77
SKA3Q8IX90 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
SKA3Q8IX90 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC3.99□□□□□ -1.77
SKA3Q8IX90 RNA5SP446-201ENST00000515955 82 ntBASIC3.99□□□□□ -1.77
SKA3Q8IX90 RNU6-1308P-201ENST00000516817 103 ntBASIC3.99□□□□□ -1.77
SKA3Q8IX90 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC3.99□□□□□ -1.77
SKA3Q8IX90 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC3.99□□□□□ -1.77
SKA3Q8IX90 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC3.99□□□□□ -1.77
SKA3Q8IX90 AP003168.1-201ENST00000530091 307 ntBASIC3.99□□□□□ -1.77
SKA3Q8IX90 AP001781.1-201ENST00000530977 207 ntBASIC3.99□□□□□ -1.77
SKA3Q8IX90 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
SKA3Q8IX90 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
SKA3Q8IX90 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC3.99□□□□□ -1.77
SKA3Q8IX90 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC3.99□□□□□ -1.77
SKA3Q8IX90 AC063949.1-201ENST00000552900 865 ntBASIC3.99□□□□□ -1.77
SKA3Q8IX90 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC3.99□□□□□ -1.77
SKA3Q8IX90 AC091178.1-203ENST00000584586 279 ntBASIC3.99□□□□□ -1.77
SKA3Q8IX90 MTCO3P22-201ENST00000603219 784 ntBASIC3.99□□□□□ -1.77
SKA3Q8IX90 AC008966.2-201ENST00000606157 453 ntBASIC3.99□□□□□ -1.77
SKA3Q8IX90 MIR7703-201ENST00000620784 77 ntBASIC3.99□□□□□ -1.77
SKA3Q8IX90 AC103858.2-201ENST00000621471 543 ntBASIC3.99□□□□□ -1.77
SKA3Q8IX90 AL356490.1-201ENST00000623079 479 ntBASIC3.99□□□□□ -1.77
SKA3Q8IX90 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
SKA3Q8IX90 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
SKA3Q8IX90 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
SKA3Q8IX90 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
SKA3Q8IX90 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC3.99□□□□□ -1.77
SKA3Q8IX90 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC3.99□□□□□ -1.77
SKA3Q8IX90 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
SKA3Q8IX90 HSPD1P14-201ENST00000432666 1618 ntBASIC3.99□□□□□ -1.77
SKA3Q8IX90 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
SKA3Q8IX90 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SKA3Q8IX90 AC012618.3-205ENST00000637896 1496 ntBASIC3.98□□□□□ -1.77
SKA3Q8IX90 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
SKA3Q8IX90 MAPK10-304ENST00000641341 3984 ntBASIC3.98□□□□□ -1.77
SKA3Q8IX90 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC3.98□□□□□ -1.77
SKA3Q8IX90 DHX40P1-201ENST00000588725 1412 ntBASIC3.98□□□□□ -1.77
SKA3Q8IX90 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SKA3Q8IX90 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
SKA3Q8IX90 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SKA3Q8IX90 MIR585-201ENST00000384887 94 ntBASIC3.98□□□□□ -1.77
SKA3Q8IX90 MIR659-201ENST00000384963 97 ntBASIC3.98□□□□□ -1.77
SKA3Q8IX90 CYB5AP4-201ENST00000396692 399 ntBASIC3.98□□□□□ -1.77
SKA3Q8IX90 SDHCP2-201ENST00000398565 501 ntBASIC3.98□□□□□ -1.77
SKA3Q8IX90 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SKA3Q8IX90 Z86062.1-201ENST00000406773 777 ntBASIC3.98□□□□□ -1.77
SKA3Q8IX90 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC3.98□□□□□ -1.77
SKA3Q8IX90 AL590139.1-201ENST00000416267 400 ntBASIC3.98□□□□□ -1.77
SKA3Q8IX90 RAD23BP1-201ENST00000421404 1227 ntBASIC3.98□□□□□ -1.77
SKA3Q8IX90 RPS12P10-201ENST00000427031 377 ntBASIC3.98□□□□□ -1.77
SKA3Q8IX90 FAR1P1-201ENST00000427163 934 ntBASIC3.98□□□□□ -1.77
SKA3Q8IX90 RPL21P91-201ENST00000429231 479 ntBASIC3.98□□□□□ -1.77
SKA3Q8IX90 MTND2P2-201ENST00000434633 945 ntBASIC3.98□□□□□ -1.77
SKA3Q8IX90 RPL7P28-201ENST00000437739 740 ntBASIC3.98□□□□□ -1.77
SKA3Q8IX90 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC3.98□□□□□ -1.77
SKA3Q8IX90 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC3.98□□□□□ -1.77
SKA3Q8IX90 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC3.98□□□□□ -1.77
SKA3Q8IX90 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC3.98□□□□□ -1.77
SKA3Q8IX90 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC3.98□□□□□ -1.77
SKA3Q8IX90 AC008897.1-201ENST00000494006 347 ntBASIC3.98□□□□□ -1.77
SKA3Q8IX90 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
SKA3Q8IX90 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC3.98□□□□□ -1.77
SKA3Q8IX90 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC3.98□□□□□ -1.77
SKA3Q8IX90 COL6A4P2-205ENST00000509855 506 ntBASIC3.98□□□□□ -1.77
SKA3Q8IX90 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
SKA3Q8IX90 HNRNPKP5-201ENST00000515300 253 ntBASIC3.98□□□□□ -1.77
SKA3Q8IX90 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC3.98□□□□□ -1.77
SKA3Q8IX90 VTA1P2-201ENST00000520205 911 ntBASIC3.98□□□□□ -1.77
SKA3Q8IX90 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
SKA3Q8IX90 AC100770.1-201ENST00000532310 322 ntBASIC3.98□□□□□ -1.77
SKA3Q8IX90 C1GALT1P1-201ENST00000548895 1089 ntBASIC3.98□□□□□ -1.77
SKA3Q8IX90 NOP56P3-201ENST00000549457 385 ntBASIC3.98□□□□□ -1.77
SKA3Q8IX90 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC3.98□□□□□ -1.77
SKA3Q8IX90 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC3.98□□□□□ -1.77
SKA3Q8IX90 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC3.98□□□□□ -1.77
SKA3Q8IX90 AC040174.2-201ENST00000602701 465 ntBASIC3.98□□□□□ -1.77
SKA3Q8IX90 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC3.98□□□□□ -1.77
SKA3Q8IX90 AL355802.4-201ENST00000607635 548 ntBASIC3.98□□□□□ -1.77
SKA3Q8IX90 AL162574.2-201ENST00000614618 657 ntBASIC3.98□□□□□ -1.77
SKA3Q8IX90 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
SKA3Q8IX90 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC3.98□□□□□ -1.77
SKA3Q8IX90 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms