Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
CLRN1P58418 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC5.08□□□□□ -1.6
CLRN1P58418 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.08□□□□□ -1.6
CLRN1P58418 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
CLRN1P58418 AC015799.1-201ENST00000622996 3122 ntBASIC5.08□□□□□ -1.6
CLRN1P58418 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CLRN1P58418 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CLRN1P58418 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
CLRN1P58418 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC5.07□□□□□ -1.6
CLRN1P58418 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.07□□□□□ -1.6
CLRN1P58418 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
CLRN1P58418 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CLRN1P58418 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
CLRN1P58418 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC5.07□□□□□ -1.6
CLRN1P58418 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
CLRN1P58418 OR5BR1P-201ENST00000524992 1330 ntBASIC5.07□□□□□ -1.6
CLRN1P58418 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CLRN1P58418 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CLRN1P58418 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
CLRN1P58418 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CLRN1P58418 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
CLRN1P58418 FGF7P2-201ENST00000332473 296 ntBASIC5.07□□□□□ -1.6
CLRN1P58418 RN7SKP275-201ENST00000364626 301 ntBASIC5.07□□□□□ -1.6
CLRN1P58418 RNU2-22P-201ENST00000411266 212 ntBASIC5.07□□□□□ -1.6
CLRN1P58418 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CLRN1P58418 MTCYBP38-201ENST00000417160 1123 ntBASIC5.07□□□□□ -1.6
CLRN1P58418 DPPA2P2-201ENST00000418220 897 ntBASIC5.07□□□□□ -1.6
CLRN1P58418 UBTFL3-201ENST00000418934 1024 ntBASIC5.07□□□□□ -1.6
CLRN1P58418 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC5.07□□□□□ -1.6
CLRN1P58418 AC092647.1-201ENST00000420654 287 ntBASIC5.07□□□□□ -1.6
CLRN1P58418 AC062016.2-201ENST00000420950 676 ntBASIC5.07□□□□□ -1.6
CLRN1P58418 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.07□□□□□ -1.6
CLRN1P58418 OR10T1P-201ENST00000424327 947 ntBASIC5.07□□□□□ -1.6
CLRN1P58418 SLC44A3-AS1-205ENST00000424505 612 ntBASIC5.07□□□□□ -1.6
CLRN1P58418 GCA-203ENST00000429691 824 ntTSL 3 BASIC5.07□□□□□ -1.6
CLRN1P58418 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC5.07□□□□□ -1.6
CLRN1P58418 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.07□□□□□ -1.6
CLRN1P58418 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC5.07□□□□□ -1.6
CLRN1P58418 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC5.07□□□□□ -1.6
CLRN1P58418 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC5.07□□□□□ -1.6
CLRN1P58418 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CLRN1P58418 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CLRN1P58418 HMGB1P4-201ENST00000455362 567 ntBASIC5.07□□□□□ -1.6
CLRN1P58418 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC5.07□□□□□ -1.6
CLRN1P58418 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC5.07□□□□□ -1.6
CLRN1P58418 UBTFL6-201ENST00000477929 1024 ntBASIC5.07□□□□□ -1.6
CLRN1P58418 AC022215.1-201ENST00000481770 362 ntBASIC5.07□□□□□ -1.6
CLRN1P58418 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.07□□□□□ -1.6
CLRN1P58418 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC5.07□□□□□ -1.6
CLRN1P58418 AC108078.3-201ENST00000502633 489 ntBASIC5.07□□□□□ -1.6
CLRN1P58418 NENFP3-201ENST00000503735 313 ntBASIC5.07□□□□□ -1.6
CLRN1P58418 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC5.07□□□□□ -1.6
CLRN1P58418 RPL37P25-201ENST00000507308 276 ntBASIC5.07□□□□□ -1.6
CLRN1P58418 HMGB1P44-201ENST00000508597 572 ntBASIC5.07□□□□□ -1.6
CLRN1P58418 SNORA48.10-201ENST00000516965 160 ntBASIC5.07□□□□□ -1.6
CLRN1P58418 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC5.07□□□□□ -1.6
CLRN1P58418 AC136777.2-201ENST00000522979 358 ntBASIC5.07□□□□□ -1.6
CLRN1P58418 AP000648.1-201ENST00000529682 397 ntBASIC5.07□□□□□ -1.6
CLRN1P58418 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC5.07□□□□□ -1.6
CLRN1P58418 SLC2A13P1-201ENST00000531560 322 ntBASIC5.07□□□□□ -1.6
CLRN1P58418 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.07□□□□□ -1.6
CLRN1P58418 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CLRN1P58418 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
CLRN1P58418 LRTOMT-215ENST00000538478 814 ntTSL 2 BASIC5.07□□□□□ -1.6
CLRN1P58418 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.07□□□□□ -1.6
CLRN1P58418 AC087883.1-201ENST00000551882 391 ntBASIC5.07□□□□□ -1.6
CLRN1P58418 AC074029.1-201ENST00000552531 1044 ntBASIC5.07□□□□□ -1.6
CLRN1P58418 AC107958.1-201ENST00000556576 290 ntBASIC5.07□□□□□ -1.6
CLRN1P58418 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.07□□□□□ -1.6
CLRN1P58418 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
CLRN1P58418 AP002360.4-201ENST00000606980 481 ntBASIC5.07□□□□□ -1.6
CLRN1P58418 AL355073.2-201ENST00000612106 557 ntBASIC5.07□□□□□ -1.6
CLRN1P58418 AL352984.2-202ENST00000613699 155 ntBASIC5.07□□□□□ -1.6
CLRN1P58418 AC013476.2-201ENST00000614456 459 ntBASIC5.07□□□□□ -1.6
CLRN1P58418 AC243756.2-201ENST00000618406 463 ntBASIC5.07□□□□□ -1.6
CLRN1P58418 AC120349.2-201ENST00000625002 298 ntBASIC5.07□□□□□ -1.6
CLRN1P58418 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC5.07□□□□□ -1.6
CLRN1P58418 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
CLRN1P58418 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC5.07□□□□□ -1.6
CLRN1P58418 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
CLRN1P58418 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC5.07□□□□□ -1.6
CLRN1P58418 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CLRN1P58418 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
CLRN1P58418 MTCO1P23-201ENST00000415223 1526 ntBASIC5.07□□□□□ -1.6
CLRN1P58418 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC5.06□□□□□ -1.6
CLRN1P58418 AC135352.1-201ENST00000506173 1418 ntBASIC5.06□□□□□ -1.6
CLRN1P58418 AC114774.1-201ENST00000507410 1770 ntBASIC5.06□□□□□ -1.6
CLRN1P58418 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC5.06□□□□□ -1.6
CLRN1P58418 AL161912.4-201ENST00000623889 2468 ntBASIC5.06□□□□□ -1.6
CLRN1P58418 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CLRN1P58418 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CLRN1P58418 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.06□□□□□ -1.6
CLRN1P58418 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
CLRN1P58418 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
CLRN1P58418 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CLRN1P58418 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
CLRN1P58418 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
CLRN1P58418 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CLRN1P58418 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC5.06□□□□□ -1.6
CLRN1P58418 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms