Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AL772161.1-201ENST00000439130 476 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 ARF4P4-201ENST00000439608 520 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 NDUFAF4P2-201ENST00000445374 520 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 CASP3P1-201ENST00000446037 609 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC4.18□□□□□ -1.74
NKX3-1Q99801 RPL7L1P1-201ENST00000448259 785 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC4.18□□□□□ -1.74
NKX3-1Q99801 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
NKX3-1Q99801 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
NKX3-1Q99801 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC4.18□□□□□ -1.74
NKX3-1Q99801 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.18□□□□□ -1.74
NKX3-1Q99801 GTF2IP12-201ENST00000456547 356 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 RN7SL329P-201ENST00000467740 299 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 RPL23AP37-201ENST00000479658 549 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
NKX3-1Q99801 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC4.18□□□□□ -1.74
NKX3-1Q99801 AC010460.2-201ENST00000509054 677 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 RN7SKP147-201ENST00000517154 244 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 RNU6-709P-201ENST00000517257 104 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 AC021451.1-201ENST00000523498 1129 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC4.18□□□□□ -1.74
NKX3-1Q99801 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
NKX3-1Q99801 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC4.18□□□□□ -1.74
NKX3-1Q99801 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC4.18□□□□□ -1.74
NKX3-1Q99801 AL049838.1-201ENST00000563647 981 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
NKX3-1Q99801 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
NKX3-1Q99801 MIR4691-201ENST00000583764 85 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 ZNF92P3-201ENST00000596594 954 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC4.18□□□□□ -1.74
NKX3-1Q99801 AL022067.1-201ENST00000602426 454 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 AC087283.1-201ENST00000604029 1074 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 AP002802.2-201ENST00000605877 235 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 AC034229.4-201ENST00000607861 441 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 AC004948.1-201ENST00000609858 672 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 AC096586.1-201ENST00000610267 561 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 RNU6-1192P-201ENST00000612197 107 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 uc_338.9-201ENST00000617424 182 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 RNU6-489P-201ENST00000618289 107 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 AC022079.2-201ENST00000619739 566 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 AP002799.1-201ENST00000623552 423 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 AP002967.1-201ENST00000624203 539 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
NKX3-1Q99801 AC008758.3-201ENST00000507003 1829 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
NKX3-1Q99801 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
NKX3-1Q99801 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC4.18□□□□□ -1.74
NKX3-1Q99801 SMG1P6-201ENST00000532337 2930 ntBASIC4.18□□□□□ -1.74
NKX3-1Q99801 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
NKX3-1Q99801 AC087190.4-201ENST00000574616 8334 ntBASIC4.17□□□□□ -1.74
NKX3-1Q99801 AC106754.1-201ENST00000562632 1513 ntBASIC4.17□□□□□ -1.74
NKX3-1Q99801 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
NKX3-1Q99801 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
NKX3-1Q99801 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
NKX3-1Q99801 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
NKX3-1Q99801 SNURFL-201ENST00000309296 343 ntBASIC4.17□□□□□ -1.74
NKX3-1Q99801 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
NKX3-1Q99801 RNU4-4P-201ENST00000364588 130 ntBASIC4.17□□□□□ -1.74
NKX3-1Q99801 SNORA62.2-201ENST00000364672 152 ntBASIC4.17□□□□□ -1.74
NKX3-1Q99801 MCTS2P-201ENST00000394552 546 ntBASIC4.17□□□□□ -1.74
NKX3-1Q99801 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC4.17□□□□□ -1.74
NKX3-1Q99801 SFR1P2-201ENST00000421841 730 ntBASIC4.17□□□□□ -1.74
NKX3-1Q99801 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC4.17□□□□□ -1.74
NKX3-1Q99801 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
NKX3-1Q99801 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
NKX3-1Q99801 AC093422.3-201ENST00000428506 305 ntBASIC4.17□□□□□ -1.74
NKX3-1Q99801 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
NKX3-1Q99801 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC4.17□□□□□ -1.74
NKX3-1Q99801 HSFY3P-201ENST00000444242 1191 ntBASIC4.17□□□□□ -1.74
NKX3-1Q99801 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC4.17□□□□□ -1.74
NKX3-1Q99801 RPL31P44-201ENST00000447680 377 ntBASIC4.17□□□□□ -1.74
NKX3-1Q99801 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC4.17□□□□□ -1.74
NKX3-1Q99801 RPL7P61-201ENST00000451721 751 ntBASIC4.17□□□□□ -1.74
NKX3-1Q99801 Z95152.1-201ENST00000453556 656 ntBASIC4.17□□□□□ -1.74
NKX3-1Q99801 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC4.17□□□□□ -1.74
NKX3-1Q99801 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC4.17□□□□□ -1.74
NKX3-1Q99801 snoU109.3-201ENST00000459477 145 ntBASIC4.17□□□□□ -1.74
NKX3-1Q99801 BX284632.1-201ENST00000478218 541 ntBASIC4.17□□□□□ -1.74
NKX3-1Q99801 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.17□□□□□ -1.74
NKX3-1Q99801 UBE2V1P12-201ENST00000503954 474 ntBASIC4.17□□□□□ -1.74
NKX3-1Q99801 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC4.17□□□□□ -1.74
NKX3-1Q99801 AC004980.4-201ENST00000513375 203 ntBASIC4.17□□□□□ -1.74
NKX3-1Q99801 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
NKX3-1Q99801 RNU6-347P-201ENST00000516658 105 ntBASIC4.17□□□□□ -1.74
NKX3-1Q99801 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC4.17□□□□□ -1.74
NKX3-1Q99801 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC4.17□□□□□ -1.74
NKX3-1Q99801 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC4.17□□□□□ -1.74
NKX3-1Q99801 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC4.17□□□□□ -1.74
NKX3-1Q99801 RN7SL339P-201ENST00000580597 296 ntBASIC4.17□□□□□ -1.74
NKX3-1Q99801 MIR4436B2-201ENST00000581415 91 ntBASIC4.17□□□□□ -1.74
NKX3-1Q99801 MIR4436B1-201ENST00000583272 91 ntBASIC4.17□□□□□ -1.74
NKX3-1Q99801 AC068870.2-201ENST00000620635 389 ntBASIC4.17□□□□□ -1.74
NKX3-1Q99801 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC4.17□□□□□ -1.74
NKX3-1Q99801 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.17□□□□□ -1.74
NKX3-1Q99801 AC073429.2-201ENST00000569694 1444 ntBASIC4.17□□□□□ -1.74
NKX3-1Q99801 ZNF849P-201ENST00000594711 1566 ntBASIC4.17□□□□□ -1.74
NKX3-1Q99801 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
NKX3-1Q99801 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
NKX3-1Q99801 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.17□□□□□ -1.74
NKX3-1Q99801 AC108751.5-201ENST00000492880 1336 ntBASIC4.17□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 204.7 ms