Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC090578.1-201ENST00000604955 591 ntBASIC6.35□□□□□ -1.39
LIG3P49916 AL359535.1-201ENST00000612100 1087 ntBASIC6.35□□□□□ -1.39
LIG3P49916 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC6.35□□□□□ -1.39
LIG3P49916 AC108479.2-201ENST00000617314 601 ntBASIC6.35□□□□□ -1.39
LIG3P49916 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
LIG3P49916 AC099654.14-201ENST00000638599 341 ntBASIC6.35□□□□□ -1.39
LIG3P49916 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
LIG3P49916 MIR193BHG-214ENST00000641765 509 ntBASIC6.35□□□□□ -1.39
LIG3P49916 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
LIG3P49916 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
LIG3P49916 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC6.35□□□□□ -1.39
LIG3P49916 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
LIG3P49916 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
LIG3P49916 PARP4P2-201ENST00000446672 3326 ntBASIC6.35□□□□□ -1.39
LIG3P49916 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
LIG3P49916 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC6.34□□□□□ -1.39
LIG3P49916 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
LIG3P49916 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
LIG3P49916 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC6.34□□□□□ -1.39
LIG3P49916 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
LIG3P49916 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC6.34□□□□□ -1.39
LIG3P49916 TLR10-207ENST00000613579 3801 ntAPPRIS P1 TSL 3 BASIC6.34□□□□□ -1.39
LIG3P49916 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC6.34□□□□□ -1.39
LIG3P49916 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
LIG3P49916 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC6.34□□□□□ -1.39
LIG3P49916 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
LIG3P49916 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
LIG3P49916 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
LIG3P49916 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC6.34□□□□□ -1.39
LIG3P49916 SNORA5.1-201ENST00000384275 131 ntBASIC6.34□□□□□ -1.39
LIG3P49916 CIR1P3-201ENST00000405137 479 ntBASIC6.34□□□□□ -1.39
LIG3P49916 AL035422.1-201ENST00000414193 397 ntBASIC6.34□□□□□ -1.39
LIG3P49916 RBMY2KP-201ENST00000418221 992 ntBASIC6.34□□□□□ -1.39
LIG3P49916 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC6.34□□□□□ -1.39
LIG3P49916 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC6.34□□□□□ -1.39
LIG3P49916 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC6.34□□□□□ -1.39
LIG3P49916 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC6.34□□□□□ -1.39
LIG3P49916 RPL37P21-201ENST00000435890 276 ntBASIC6.34□□□□□ -1.39
LIG3P49916 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC6.34□□□□□ -1.39
LIG3P49916 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
LIG3P49916 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC6.34□□□□□ -1.39
LIG3P49916 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC6.34□□□□□ -1.39
LIG3P49916 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC6.34□□□□□ -1.39
LIG3P49916 AC091564.1-201ENST00000464563 479 ntBASIC6.34□□□□□ -1.39
LIG3P49916 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
LIG3P49916 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
LIG3P49916 AC021678.1-201ENST00000505195 936 ntBASIC6.34□□□□□ -1.39
LIG3P49916 OR4D12P-201ENST00000509361 911 ntBASIC6.34□□□□□ -1.39
LIG3P49916 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC6.34□□□□□ -1.39
LIG3P49916 KHDC1P1-201ENST00000511053 508 ntBASIC6.34□□□□□ -1.39
LIG3P49916 AC091133.4-201ENST00000511142 308 ntBASIC6.34□□□□□ -1.39
LIG3P49916 AC074344.1-201ENST00000512823 224 ntBASIC6.34□□□□□ -1.39
LIG3P49916 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC6.34□□□□□ -1.39
LIG3P49916 HMGB1P42-201ENST00000532126 553 ntBASIC6.34□□□□□ -1.39
LIG3P49916 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC6.34□□□□□ -1.39
LIG3P49916 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC6.34□□□□□ -1.39
LIG3P49916 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC6.34□□□□□ -1.39
LIG3P49916 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC6.34□□□□□ -1.39
LIG3P49916 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC6.34□□□□□ -1.39
LIG3P49916 MIR4271-201ENST00000582451 67 ntBASIC6.34□□□□□ -1.39
LIG3P49916 APOC2-205ENST00000592257 444 ntTSL 3 BASIC6.34□□□□□ -1.39
LIG3P49916 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC6.34□□□□□ -1.39
LIG3P49916 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
LIG3P49916 PRELID3BP8-201ENST00000604148 295 ntBASIC6.34□□□□□ -1.39
LIG3P49916 AC112187.2-201ENST00000604345 283 ntBASIC6.34□□□□□ -1.39
LIG3P49916 AL008723.3-201ENST00000608926 449 ntBASIC6.34□□□□□ -1.39
LIG3P49916 AL136097.3-201ENST00000611097 505 ntBASIC6.34□□□□□ -1.39
LIG3P49916 AC092794.2-201ENST00000620933 563 ntBASIC6.34□□□□□ -1.39
LIG3P49916 AC022140.2-201ENST00000623500 188 ntBASIC6.34□□□□□ -1.39
LIG3P49916 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC6.34□□□□□ -1.39
LIG3P49916 AC073592.6-201ENST00000624271 415 ntBASIC6.34□□□□□ -1.39
LIG3P49916 AC141930.3-201ENST00000640435 762 ntTSL 5 BASIC6.34□□□□□ -1.39
LIG3P49916 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC6.34□□□□□ -1.39
LIG3P49916 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
LIG3P49916 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
LIG3P49916 AC025125.1-201ENST00000624743 1922 ntBASIC6.34□□□□□ -1.39
LIG3P49916 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
LIG3P49916 CSTF3-201ENST00000323959 2797 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
LIG3P49916 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
LIG3P49916 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
LIG3P49916 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC6.33□□□□□ -1.4
LIG3P49916 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC6.33□□□□□ -1.4
LIG3P49916 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
LIG3P49916 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC6.33□□□□□ -1.4
LIG3P49916 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
LIG3P49916 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
LIG3P49916 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC6.33□□□□□ -1.4
LIG3P49916 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC6.33□□□□□ -1.4
LIG3P49916 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
LIG3P49916 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
LIG3P49916 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
LIG3P49916 RNU6-797P-201ENST00000363101 109 ntBASIC6.33□□□□□ -1.4
LIG3P49916 Y_RNA.256-201ENST00000364594 104 ntBASIC6.33□□□□□ -1.4
LIG3P49916 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
LIG3P49916 SNORA11.5-201ENST00000408163 128 ntBASIC6.33□□□□□ -1.4
LIG3P49916 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
LIG3P49916 Y_RNA.598-201ENST00000410480 95 ntBASIC6.33□□□□□ -1.4
LIG3P49916 AC073264.1-201ENST00000411508 416 ntBASIC6.33□□□□□ -1.4
LIG3P49916 NPM1P4-201ENST00000414095 812 ntBASIC6.33□□□□□ -1.4
LIG3P49916 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC6.33□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 83.8 ms