Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 SEC62-201ENST00000337002 6568 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
TRIM35Q9UPQ4 AL117339.5-201ENST00000640275 3955 ntAPPRIS P1 TSL 5 BASIC8.95□□□□□ -0.98
TRIM35Q9UPQ4 AP002026.1-201ENST00000500358 4825 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
TRIM35Q9UPQ4 RTL9-201ENST00000465301 5426 ntAPPRIS P2 TSL 1 (best) BASIC8.95□□□□□ -0.98
TRIM35Q9UPQ4 TRIM5-203ENST00000396847 3170 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
TRIM35Q9UPQ4 LINC01788-201ENST00000419450 2086 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
TRIM35Q9UPQ4 AC011525.1-201ENST00000562167 5676 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
TRIM35Q9UPQ4 TRAF5-202ENST00000336184 3972 ntAPPRIS P1 TSL 5 BASIC8.95□□□□□ -0.98
TRIM35Q9UPQ4 PPP2R2B-202ENST00000394409 10704 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
TRIM35Q9UPQ4 MAP3K20-201ENST00000338983 7179 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
TRIM35Q9UPQ4 AC003985.2-201ENST00000562268 1669 ntBASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 PGAP1-201ENST00000354764 11114 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 PUM1-205ENST00000424085 4631 ntTSL 5 BASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 NUMB-203ENST00000359560 3309 ntAPPRIS P3 TSL 5 BASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 CDYL2-207ENST00000570137 8159 ntAPPRIS P2 TSL 1 (best) BASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 LINC00683-202ENST00000579781 3510 ntTSL 2 BASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 LNPEP-201ENST00000231368 12752 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 CTNND1-203ENST00000361391 6232 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 CTNND1-204ENST00000361796 6226 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 Y_RNA.46-201ENST00000362695 102 ntBASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 RNU1-115P-201ENST00000365329 160 ntBASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 AC092634.1-201ENST00000366505 199 ntBASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 AL672167.2-201ENST00000377164 879 ntBASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 SNORA70G-201ENST00000383923 142 ntBASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 Y_RNA.483-201ENST00000384380 101 ntBASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 ARSFP1-201ENST00000398758 477 ntBASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 AL590806.1-201ENST00000415818 853 ntBASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 AC105275.1-201ENST00000417794 491 ntTSL 3 BASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 SPATA20P1-201ENST00000423089 438 ntBASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 AC006548.1-201ENST00000427470 102 ntBASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 AC096775.1-201ENST00000437724 448 ntBASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 MED28P3-201ENST00000444288 531 ntBASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 AC099786.1-201ENST00000446238 670 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 RN7SL654P-201ENST00000479178 292 ntBASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 HMGB1P35-201ENST00000503360 598 ntBASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 AC093878.1-201ENST00000515630 432 ntBASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 IGHV3-76-201ENST00000522465 295 ntBASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 AC022616.3-201ENST00000523940 148 ntBASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 IGKV2OR2-7D-201ENST00000603664 304 ntBASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 IGKV2OR2-7-201ENST00000604652 304 ntBASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 WWOX-217ENST00000620008 450 ntTSL 2 BASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 AC103858.2-201ENST00000621471 543 ntBASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 CLRN1-202ENST00000327047 2359 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 RIF1-206ENST00000453091 8053 ntAPPRIS ALT2 TSL 1 (best) BASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 UTY-209ENST00000537580 6490 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 FCHSD2-203ENST00000409314 4509 ntTSL 5 BASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 TSC1-201ENST00000298552 8604 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 CCDC102B-210ENST00000584156 1554 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 AL049780.3-201ENST00000624612 1583 ntBASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 FAM186A-201ENST00000327337 7127 ntAPPRIS P2 TSL 5 BASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 SLC22A25-201ENST00000306494 1692 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 LRP2BP-203ENST00000510776 3055 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 TBC1D5-209ENST00000429383 3156 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
TRIM35Q9UPQ4 ZNF226-213ENST00000588883 5972 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 RACGAP1-221ENST00000551016 2193 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 MAPK6-201ENST00000261845 5345 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 RSF1-201ENST00000308488 11550 ntAPPRIS P2 TSL 1 (best) BASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 FAM135B-204ENST00000395297 6962 ntAPPRIS P1 TSL 5 BASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 CYP4A22-206ENST00000619754 2351 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 CLTC-201ENST00000269122 7760 ntAPPRIS P3 TSL 1 (best) BASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 ZNF229-204ENST00000614049 4507 ntAPPRIS P3 TSL 1 (best) BASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 VTCN1-207ENST00000539893 2719 ntTSL 2 BASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 RNA5SP382-201ENST00000363355 112 ntBASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 RNY1P12-201ENST00000364251 105 ntBASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 ATP5EP2-201ENST00000381026 385 ntAPPRIS P1 BASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 PCNPP3-201ENST00000393579 471 ntBASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 ACTR3BP6-201ENST00000422332 1241 ntBASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 RPS6P12-201ENST00000432491 726 ntBASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 TRAPPC2P3-201ENST00000443200 321 ntBASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 MORF4-201ENST00000447135 971 ntBASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 OSBPL10-AS1-206ENST00000447181 575 ntTSL 4 BASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 GAPDHP14-201ENST00000450472 937 ntBASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 AL390728.3-201ENST00000452704 270 ntBASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 AC079168.1-201ENST00000458741 345 ntBASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 TFP1-201ENST00000460564 572 ntTSL 4 BASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 RPS26P11-201ENST00000463445 348 ntBASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 RPS26P6-201ENST00000475156 348 ntBASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 TFP1-203ENST00000490470 561 ntTSL 4 BASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 TRBVA-201ENST00000498804 316 ntBASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 RCHY1-206ENST00000507014 650 ntTSL 3 BASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 AC006499.2-201ENST00000513470 337 ntBASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 RNU6-1220P-201ENST00000517126 108 ntBASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 AC007068.2-201ENST00000543168 395 ntBASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 AC008752.2-201ENST00000591174 750 ntTSL 3 BASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 TSPAN6-205ENST00000614008 900 ntTSL 5 BASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 AC244517.6-202ENST00000623884 566 ntAPPRIS P1 TSL 4 BASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 TAT-201ENST00000355962 3983 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.98
TRIM35Q9UPQ4 ACTR3BP5-201ENST00000448440 1479 ntBASIC8.93□□□□□ -0.98
Retrieved 100 of 98,524 protein–RNA pairs in 114 ms