Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
SKA3Q8IX90 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
SKA3Q8IX90 ASNSP1-201ENST00000518311 1939 ntBASIC4.03□□□□□ -1.76
SKA3Q8IX90 A2MP1-204ENST00000566278 4130 ntBASIC4.03□□□□□ -1.76
SKA3Q8IX90 AC074029.4-201ENST00000624796 1859 ntBASIC4.03□□□□□ -1.76
SKA3Q8IX90 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC4.03□□□□□ -1.76
SKA3Q8IX90 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SKA3Q8IX90 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
SKA3Q8IX90 SNORA71.2-201ENST00000364941 134 ntBASIC4.03□□□□□ -1.76
SKA3Q8IX90 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
SKA3Q8IX90 RNU2-50P-201ENST00000410494 143 ntBASIC4.03□□□□□ -1.76
SKA3Q8IX90 RN7SKP216-201ENST00000411050 312 ntBASIC4.03□□□□□ -1.76
SKA3Q8IX90 RANP4-201ENST00000413361 655 ntBASIC4.03□□□□□ -1.76
SKA3Q8IX90 BTF3P9-201ENST00000418784 283 ntBASIC4.03□□□□□ -1.76
SKA3Q8IX90 RPL21P43-201ENST00000425440 472 ntBASIC4.03□□□□□ -1.76
SKA3Q8IX90 NANOGP6-201ENST00000429190 847 ntBASIC4.03□□□□□ -1.76
SKA3Q8IX90 NDUFA5P10-201ENST00000432147 357 ntBASIC4.03□□□□□ -1.76
SKA3Q8IX90 ZFAND6P1-201ENST00000434138 605 ntBASIC4.03□□□□□ -1.76
SKA3Q8IX90 AL359265.2-201ENST00000434367 631 ntBASIC4.03□□□□□ -1.76
SKA3Q8IX90 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC4.03□□□□□ -1.76
SKA3Q8IX90 MTCO3P43-201ENST00000440974 771 ntBASIC4.03□□□□□ -1.76
SKA3Q8IX90 AL157827.1-201ENST00000447622 132 ntBASIC4.03□□□□□ -1.76
SKA3Q8IX90 AL935212.3-201ENST00000450729 284 ntBASIC4.03□□□□□ -1.76
SKA3Q8IX90 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC4.03□□□□□ -1.76
SKA3Q8IX90 AC022431.1-201ENST00000450941 438 ntBASIC4.03□□□□□ -1.76
SKA3Q8IX90 AC243772.1-201ENST00000451620 410 ntBASIC4.03□□□□□ -1.76
SKA3Q8IX90 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SKA3Q8IX90 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC4.03□□□□□ -1.76
SKA3Q8IX90 HMGB1P3-201ENST00000502802 616 ntBASIC4.03□□□□□ -1.76
SKA3Q8IX90 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC4.03□□□□□ -1.76
SKA3Q8IX90 HMGB1P46-201ENST00000520062 610 ntBASIC4.03□□□□□ -1.76
SKA3Q8IX90 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC4.03□□□□□ -1.76
SKA3Q8IX90 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.03□□□□□ -1.76
SKA3Q8IX90 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC4.03□□□□□ -1.76
SKA3Q8IX90 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC4.03□□□□□ -1.76
SKA3Q8IX90 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC4.03□□□□□ -1.76
SKA3Q8IX90 AL133338.2-201ENST00000604292 736 ntBASIC4.03□□□□□ -1.76
SKA3Q8IX90 AC004948.1-201ENST00000609858 672 ntBASIC4.03□□□□□ -1.76
SKA3Q8IX90 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC4.03□□□□□ -1.76
SKA3Q8IX90 AC078899.5-201ENST00000612475 178 ntBASIC4.03□□□□□ -1.76
SKA3Q8IX90 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SKA3Q8IX90 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
SKA3Q8IX90 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.03□□□□□ -1.76
SKA3Q8IX90 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
SKA3Q8IX90 KARSP3-201ENST00000571212 1504 ntBASIC4.03□□□□□ -1.76
SKA3Q8IX90 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.03□□□□□ -1.76
SKA3Q8IX90 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
SKA3Q8IX90 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
SKA3Q8IX90 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC4.02□□□□□ -1.77
SKA3Q8IX90 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
SKA3Q8IX90 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
SKA3Q8IX90 AC017002.4-201ENST00000604721 1525 ntBASIC4.02□□□□□ -1.77
SKA3Q8IX90 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.02□□□□□ -1.77
SKA3Q8IX90 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.02□□□□□ -1.77
SKA3Q8IX90 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
SKA3Q8IX90 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
SKA3Q8IX90 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.02□□□□□ -1.77
SKA3Q8IX90 AC021146.4-201ENST00000309229 279 ntBASIC4.02□□□□□ -1.77
SKA3Q8IX90 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC4.02□□□□□ -1.77
SKA3Q8IX90 RNVU1-6-201ENST00000364688 164 ntBASIC4.02□□□□□ -1.77
SKA3Q8IX90 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
SKA3Q8IX90 NCSTNP1-201ENST00000406229 144 ntBASIC4.02□□□□□ -1.77
SKA3Q8IX90 AL034374.1-201ENST00000406329 351 ntBASIC4.02□□□□□ -1.77
SKA3Q8IX90 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
SKA3Q8IX90 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC4.02□□□□□ -1.77
SKA3Q8IX90 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC4.02□□□□□ -1.77
SKA3Q8IX90 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC4.02□□□□□ -1.77
SKA3Q8IX90 MTND4LP7-201ENST00000431728 294 ntBASIC4.02□□□□□ -1.77
SKA3Q8IX90 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.02□□□□□ -1.77
SKA3Q8IX90 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC4.02□□□□□ -1.77
SKA3Q8IX90 AL691517.1-201ENST00000440833 1235 ntBASIC4.02□□□□□ -1.77
SKA3Q8IX90 SBDSP1-204ENST00000453858 737 ntBASIC4.02□□□□□ -1.77
SKA3Q8IX90 PSMC1P13-201ENST00000458195 985 ntBASIC4.02□□□□□ -1.77
SKA3Q8IX90 MTCO1P31-201ENST00000506355 492 ntBASIC4.02□□□□□ -1.77
SKA3Q8IX90 CDV3-208ENST00000511392 554 ntTSL 5 BASIC4.02□□□□□ -1.77
SKA3Q8IX90 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC4.02□□□□□ -1.77
SKA3Q8IX90 OR8X1P-201ENST00000534542 869 ntBASIC4.02□□□□□ -1.77
SKA3Q8IX90 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC4.02□□□□□ -1.77
SKA3Q8IX90 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC4.02□□□□□ -1.77
SKA3Q8IX90 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC4.02□□□□□ -1.77
SKA3Q8IX90 RN7SL690P-201ENST00000582087 240 ntBASIC4.02□□□□□ -1.77
SKA3Q8IX90 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC4.02□□□□□ -1.77
SKA3Q8IX90 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC4.02□□□□□ -1.77
SKA3Q8IX90 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC4.02□□□□□ -1.77
SKA3Q8IX90 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC4.02□□□□□ -1.77
SKA3Q8IX90 AC135803.1-201ENST00000608748 565 ntBASIC4.02□□□□□ -1.77
SKA3Q8IX90 CR589904.2-201ENST00000612533 440 ntBASIC4.02□□□□□ -1.77
SKA3Q8IX90 MIR6780A-201ENST00000615089 68 ntBASIC4.02□□□□□ -1.77
SKA3Q8IX90 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC4.02□□□□□ -1.77
SKA3Q8IX90 AC091948.2-201ENST00000636510 279 ntBASIC4.02□□□□□ -1.77
SKA3Q8IX90 AC007342.7-201ENST00000624610 2337 ntBASIC4.02□□□□□ -1.77
SKA3Q8IX90 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
SKA3Q8IX90 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
SKA3Q8IX90 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
SKA3Q8IX90 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
SKA3Q8IX90 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.02□□□□□ -1.77
SKA3Q8IX90 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC4.02□□□□□ -1.77
SKA3Q8IX90 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.02□□□□□ -1.77
SKA3Q8IX90 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
SKA3Q8IX90 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 89.2 ms