Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 NPM1P28-201ENST00000492269 840 ntBASIC6.76□□□□□ -1.33
CUX1P39880 PANCR-201ENST00000503456 493 ntTSL 5 BASIC6.76□□□□□ -1.33
CUX1P39880 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC6.76□□□□□ -1.33
CUX1P39880 IGKV1OR2-1-201ENST00000514060 354 ntBASIC6.76□□□□□ -1.33
CUX1P39880 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
CUX1P39880 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC6.76□□□□□ -1.33
CUX1P39880 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
CUX1P39880 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
CUX1P39880 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
CUX1P39880 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
CUX1P39880 GVINP1-202ENST00000531871 7271 ntBASIC6.76□□□□□ -1.33
CUX1P39880 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
CUX1P39880 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
CUX1P39880 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC6.76□□□□□ -1.33
CUX1P39880 OR51B4-201ENST00000380224 933 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
CUX1P39880 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
CUX1P39880 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC6.76□□□□□ -1.33
CUX1P39880 RPS3AP12-201ENST00000443616 753 ntBASIC6.76□□□□□ -1.33
CUX1P39880 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC6.76□□□□□ -1.33
CUX1P39880 snoU13.24-201ENST00000458998 104 ntBASIC6.76□□□□□ -1.33
CUX1P39880 RPS26P28-201ENST00000470806 348 ntBASIC6.76□□□□□ -1.33
CUX1P39880 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC6.76□□□□□ -1.33
CUX1P39880 RNU7-143P-201ENST00000516781 65 ntBASIC6.76□□□□□ -1.33
CUX1P39880 RERGL-202ENST00000536890 367 ntTSL 3 BASIC6.76□□□□□ -1.33
CUX1P39880 AC000374.1-201ENST00000434698 1745 ntBASIC6.75□□□□□ -1.33
CUX1P39880 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
CUX1P39880 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
CUX1P39880 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
CUX1P39880 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
CUX1P39880 RALGAPA1P1-201ENST00000443361 6232 ntBASIC6.75□□□□□ -1.33
CUX1P39880 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC6.75□□□□□ -1.33
CUX1P39880 ZNF402P-201ENST00000404435 3100 ntBASIC6.75□□□□□ -1.33
CUX1P39880 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
CUX1P39880 AL161631.1-201ENST00000417933 486 ntBASIC6.75□□□□□ -1.33
CUX1P39880 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC6.75□□□□□ -1.33
CUX1P39880 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC6.75□□□□□ -1.33
CUX1P39880 RAD23BP3-201ENST00000454157 1152 ntBASIC6.75□□□□□ -1.33
CUX1P39880 AC018635.1-201ENST00000468292 1030 ntBASIC6.75□□□□□ -1.33
CUX1P39880 HMGN1P15-201ENST00000513870 295 ntBASIC6.75□□□□□ -1.33
CUX1P39880 MIR3922-201ENST00000585192 84 ntBASIC6.75□□□□□ -1.33
CUX1P39880 AC091167.4-201ENST00000605079 184 ntBASIC6.75□□□□□ -1.33
CUX1P39880 AC140113.4-201ENST00000622087 222 ntBASIC6.75□□□□□ -1.33
CUX1P39880 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC6.75□□□□□ -1.33
CUX1P39880 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
CUX1P39880 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC6.75□□□□□ -1.33
CUX1P39880 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC6.75□□□□□ -1.33
CUX1P39880 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC6.74□□□□□ -1.33
CUX1P39880 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC6.74□□□□□ -1.33
CUX1P39880 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC6.74□□□□□ -1.33
CUX1P39880 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
CUX1P39880 AL513548.1-201ENST00000562904 1724 ntBASIC6.74□□□□□ -1.33
CUX1P39880 EEF1A1P42-201ENST00000613436 1331 ntBASIC6.74□□□□□ -1.33
CUX1P39880 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
CUX1P39880 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC6.74□□□□□ -1.33
CUX1P39880 MIR491-201ENST00000384877 84 ntBASIC6.74□□□□□ -1.33
CUX1P39880 AC007068.1-201ENST00000396690 844 ntBASIC6.74□□□□□ -1.33
CUX1P39880 AC245052.5-201ENST00000416320 649 ntBASIC6.74□□□□□ -1.33
CUX1P39880 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC6.74□□□□□ -1.33
CUX1P39880 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC6.74□□□□□ -1.33
CUX1P39880 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC6.74□□□□□ -1.33
CUX1P39880 Z97055.1-201ENST00000419730 712 ntBASIC6.74□□□□□ -1.33
CUX1P39880 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC6.74□□□□□ -1.33
CUX1P39880 AL159987.2-201ENST00000432754 307 ntBASIC6.74□□□□□ -1.33
CUX1P39880 PRDX3P3-201ENST00000447765 522 ntBASIC6.74□□□□□ -1.33
CUX1P39880 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC6.74□□□□□ -1.33
CUX1P39880 AL133162.1-201ENST00000463228 453 ntBASIC6.74□□□□□ -1.33
CUX1P39880 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC6.74□□□□□ -1.33
CUX1P39880 AC063950.1-201ENST00000552036 308 ntBASIC6.74□□□□□ -1.33
CUX1P39880 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC6.74□□□□□ -1.33
CUX1P39880 AC005344.1-201ENST00000613391 459 ntBASIC6.74□□□□□ -1.33
CUX1P39880 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
CUX1P39880 THAP12P5-201ENST00000405864 2275 ntBASIC6.73□□□□□ -1.33
CUX1P39880 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
CUX1P39880 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC6.73□□□□□ -1.33
CUX1P39880 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC6.73□□□□□ -1.33
CUX1P39880 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC6.73□□□□□ -1.33
CUX1P39880 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC6.73□□□□□ -1.33
CUX1P39880 AC008155.2-201ENST00000464337 397 ntBASIC6.73□□□□□ -1.33
CUX1P39880 AC006971.1-201ENST00000407916 4486 ntBASIC6.73□□□□□ -1.33
CUX1P39880 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC6.73□□□□□ -1.33
CUX1P39880 VDAC1P9-201ENST00000412766 841 ntBASIC6.72□□□□□ -1.33
CUX1P39880 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC6.72□□□□□ -1.33
CUX1P39880 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC6.72□□□□□ -1.33
CUX1P39880 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC6.72□□□□□ -1.33
CUX1P39880 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC6.72□□□□□ -1.33
CUX1P39880 AC107993.1-201ENST00000591343 684 ntBASIC6.72□□□□□ -1.33
CUX1P39880 AC244505.7-201ENST00000599675 272 ntBASIC6.72□□□□□ -1.33
CUX1P39880 SNX6P1-201ENST00000601728 1224 ntBASIC6.72□□□□□ -1.33
CUX1P39880 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC6.72□□□□□ -1.33
CUX1P39880 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
CUX1P39880 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC6.72□□□□□ -1.33
CUX1P39880 LINC00561-201ENST00000565815 2738 ntBASIC6.72□□□□□ -1.33
CUX1P39880 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
CUX1P39880 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
CUX1P39880 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC6.72□□□□□ -1.33
CUX1P39880 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
CUX1P39880 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC6.71□□□□□ -1.33
CUX1P39880 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
CUX1P39880 SNORD3H-201ENST00000384486 214 ntBASIC6.71□□□□□ -1.33
CUX1P39880 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms