Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.31□□□□□ -1.72
SHOX2O60902 PARD3-204ENST00000374768 799 ntTSL 3 BASIC4.31□□□□□ -1.72
SHOX2O60902 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.31□□□□□ -1.72
SHOX2O60902 RN7SKP213-201ENST00000410746 298 ntBASIC4.31□□□□□ -1.72
SHOX2O60902 RPS20P14-201ENST00000412545 360 ntBASIC4.31□□□□□ -1.72
SHOX2O60902 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC4.31□□□□□ -1.72
SHOX2O60902 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
SHOX2O60902 COX6CP17-201ENST00000421389 185 ntBASIC4.31□□□□□ -1.72
SHOX2O60902 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
SHOX2O60902 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
SHOX2O60902 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC4.31□□□□□ -1.72
SHOX2O60902 TPT1P12-201ENST00000448968 492 ntBASIC4.31□□□□□ -1.72
SHOX2O60902 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.31□□□□□ -1.72
SHOX2O60902 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC4.31□□□□□ -1.72
SHOX2O60902 RPL7AP6-201ENST00000477943 801 ntBASIC4.31□□□□□ -1.72
SHOX2O60902 RPL23AP72-201ENST00000492447 435 ntBASIC4.31□□□□□ -1.72
SHOX2O60902 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC4.31□□□□□ -1.72
SHOX2O60902 BTF3P13-201ENST00000513224 490 ntBASIC4.31□□□□□ -1.72
SHOX2O60902 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC4.31□□□□□ -1.72
SHOX2O60902 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4.31□□□□□ -1.72
SHOX2O60902 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC4.31□□□□□ -1.72
SHOX2O60902 SS18L2P2-201ENST00000583960 235 ntBASIC4.31□□□□□ -1.72
SHOX2O60902 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC4.31□□□□□ -1.72
SHOX2O60902 Z82195.1-201ENST00000604558 398 ntBASIC4.31□□□□□ -1.72
SHOX2O60902 AC009163.6-201ENST00000612367 342 ntBASIC4.31□□□□□ -1.72
SHOX2O60902 AC007546.1-201ENST00000619452 559 ntBASIC4.31□□□□□ -1.72
SHOX2O60902 AP002967.1-201ENST00000624203 539 ntBASIC4.31□□□□□ -1.72
SHOX2O60902 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC4.31□□□□□ -1.72
SHOX2O60902 U3.53-201ENST00000628922 216 ntBASIC4.31□□□□□ -1.72
SHOX2O60902 BMS1P21-201ENST00000634565 365 ntBASIC4.31□□□□□ -1.72
SHOX2O60902 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
SHOX2O60902 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
SHOX2O60902 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
SHOX2O60902 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
SHOX2O60902 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SHOX2O60902 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC4.31□□□□□ -1.72
SHOX2O60902 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SHOX2O60902 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SHOX2O60902 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
SHOX2O60902 CYP1D1P-201ENST00000416662 1433 ntBASIC4.3□□□□□ -1.72
SHOX2O60902 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
SHOX2O60902 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
SHOX2O60902 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.3□□□□□ -1.72
SHOX2O60902 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.3□□□□□ -1.72
SHOX2O60902 AC021146.4-201ENST00000309229 279 ntBASIC4.3□□□□□ -1.72
SHOX2O60902 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC4.3□□□□□ -1.72
SHOX2O60902 RNA5SP191-201ENST00000362585 102 ntBASIC4.3□□□□□ -1.72
SHOX2O60902 OR13C3-201ENST00000374781 1108 ntBASIC4.3□□□□□ -1.72
SHOX2O60902 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC4.3□□□□□ -1.72
SHOX2O60902 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
SHOX2O60902 RPL30P2-201ENST00000414021 291 ntBASIC4.3□□□□□ -1.72
SHOX2O60902 AC009237.5-201ENST00000414271 501 ntBASIC4.3□□□□□ -1.72
SHOX2O60902 SMC4P1-201ENST00000414479 527 ntBASIC4.3□□□□□ -1.72
SHOX2O60902 RPL26P29-201ENST00000415623 438 ntBASIC4.3□□□□□ -1.72
SHOX2O60902 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC4.3□□□□□ -1.72
SHOX2O60902 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC4.3□□□□□ -1.72
SHOX2O60902 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC4.3□□□□□ -1.72
SHOX2O60902 AC114495.1-201ENST00000441274 436 ntBASIC4.3□□□□□ -1.72
SHOX2O60902 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC4.3□□□□□ -1.72
SHOX2O60902 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC4.3□□□□□ -1.72
SHOX2O60902 AC110775.1-201ENST00000513721 462 ntBASIC4.3□□□□□ -1.72
SHOX2O60902 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.3□□□□□ -1.72
SHOX2O60902 MEG8-217ENST00000556637 924 ntTSL 5 BASIC4.3□□□□□ -1.72
SHOX2O60902 AC009101.1-201ENST00000568135 242 ntBASIC4.3□□□□□ -1.72
SHOX2O60902 MIR1254-2-201ENST00000579553 63 ntBASIC4.3□□□□□ -1.72
SHOX2O60902 MIR4646-201ENST00000580775 63 ntBASIC4.3□□□□□ -1.72
SHOX2O60902 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC4.3□□□□□ -1.72
SHOX2O60902 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC4.3□□□□□ -1.72
SHOX2O60902 MRPS35P3-201ENST00000603189 709 ntBASIC4.3□□□□□ -1.72
SHOX2O60902 AL034351.1-201ENST00000605288 668 ntBASIC4.3□□□□□ -1.72
SHOX2O60902 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SHOX2O60902 AC090510.2-201ENST00000617465 629 ntBASIC4.3□□□□□ -1.72
SHOX2O60902 AP003400.2-201ENST00000624036 666 ntBASIC4.3□□□□□ -1.72
SHOX2O60902 AC006065.6-201ENST00000625201 545 ntBASIC4.3□□□□□ -1.72
SHOX2O60902 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC4.3□□□□□ -1.72
SHOX2O60902 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
SHOX2O60902 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SHOX2O60902 AC010300.1-201ENST00000600671 5134 ntBASIC4.3□□□□□ -1.72
SHOX2O60902 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SHOX2O60902 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.3□□□□□ -1.72
SHOX2O60902 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
SHOX2O60902 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.3□□□□□ -1.72
SHOX2O60902 HSPD1P11-201ENST00000508643 1702 ntBASIC4.29□□□□□ -1.72
SHOX2O60902 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.29□□□□□ -1.72
SHOX2O60902 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SHOX2O60902 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.29□□□□□ -1.72
SHOX2O60902 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
SHOX2O60902 RNA5SP123-201ENST00000363244 119 ntBASIC4.29□□□□□ -1.72
SHOX2O60902 MIR1183-201ENST00000408856 89 ntBASIC4.29□□□□□ -1.72
SHOX2O60902 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC4.29□□□□□ -1.72
SHOX2O60902 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC4.29□□□□□ -1.72
SHOX2O60902 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC4.29□□□□□ -1.72
SHOX2O60902 CEACAMP7-201ENST00000444105 496 ntBASIC4.29□□□□□ -1.72
SHOX2O60902 EEF1A1P1-201ENST00000447052 739 ntBASIC4.29□□□□□ -1.72
SHOX2O60902 AL162388.1-201ENST00000450912 352 ntBASIC4.29□□□□□ -1.72
SHOX2O60902 MTND6P32-201ENST00000457611 483 ntBASIC4.29□□□□□ -1.72
SHOX2O60902 RN7SL481P-201ENST00000477764 299 ntBASIC4.29□□□□□ -1.72
SHOX2O60902 RPSAP50-201ENST00000481955 852 ntBASIC4.29□□□□□ -1.72
SHOX2O60902 RN7SL809P-201ENST00000482040 297 ntBASIC4.29□□□□□ -1.72
SHOX2O60902 AC109462.1-201ENST00000491087 368 ntBASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms