Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
SHANK3Q9BYB0 AL731532.2-201ENST00000623542 1953 ntBASIC5.37□□□□□ -1.55
SHANK3Q9BYB0 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.37□□□□□ -1.55
SHANK3Q9BYB0 LINC00561-201ENST00000565815 2738 ntBASIC5.37□□□□□ -1.55
SHANK3Q9BYB0 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SHANK3Q9BYB0 OR52E6-202ENST00000379946 954 ntBASIC5.37□□□□□ -1.55
SHANK3Q9BYB0 AC007066.1-201ENST00000392902 381 ntBASIC5.37□□□□□ -1.55
SHANK3Q9BYB0 EIF1P3-201ENST00000423841 334 ntBASIC5.37□□□□□ -1.55
SHANK3Q9BYB0 RPL7P4-203ENST00000430239 730 ntBASIC5.37□□□□□ -1.55
SHANK3Q9BYB0 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC5.37□□□□□ -1.55
SHANK3Q9BYB0 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC5.37□□□□□ -1.55
SHANK3Q9BYB0 RPS20P21-201ENST00000466859 343 ntBASIC5.37□□□□□ -1.55
SHANK3Q9BYB0 CDH12P2-201ENST00000504393 298 ntBASIC5.37□□□□□ -1.55
SHANK3Q9BYB0 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC5.37□□□□□ -1.55
SHANK3Q9BYB0 RN7SKP141-201ENST00000516167 338 ntBASIC5.37□□□□□ -1.55
SHANK3Q9BYB0 SCARNA14-201ENST00000516903 136 ntBASIC5.37□□□□□ -1.55
SHANK3Q9BYB0 OSBPL9P2-201ENST00000526582 1228 ntBASIC5.37□□□□□ -1.55
SHANK3Q9BYB0 AC027455.1-201ENST00000574104 594 ntBASIC5.37□□□□□ -1.55
SHANK3Q9BYB0 PACRG-211ENST00000621363 360 ntTSL 5 BASIC5.37□□□□□ -1.55
SHANK3Q9BYB0 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SHANK3Q9BYB0 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC5.37□□□□□ -1.55
SHANK3Q9BYB0 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC5.36□□□□□ -1.55
SHANK3Q9BYB0 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SHANK3Q9BYB0 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
SHANK3Q9BYB0 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SHANK3Q9BYB0 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC5.36□□□□□ -1.55
SHANK3Q9BYB0 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SHANK3Q9BYB0 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SHANK3Q9BYB0 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SHANK3Q9BYB0 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SHANK3Q9BYB0 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SHANK3Q9BYB0 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SHANK3Q9BYB0 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
SHANK3Q9BYB0 VTI1BP4-201ENST00000427516 527 ntBASIC5.36□□□□□ -1.55
SHANK3Q9BYB0 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC5.36□□□□□ -1.55
SHANK3Q9BYB0 RPS27AP15-201ENST00000447672 466 ntBASIC5.36□□□□□ -1.55
SHANK3Q9BYB0 GAPDHP36-201ENST00000480688 918 ntBASIC5.36□□□□□ -1.55
SHANK3Q9BYB0 AL358832.1-201ENST00000497800 389 ntBASIC5.36□□□□□ -1.55
SHANK3Q9BYB0 BNIP3P41-201ENST00000503774 571 ntBASIC5.36□□□□□ -1.55
SHANK3Q9BYB0 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC5.36□□□□□ -1.55
SHANK3Q9BYB0 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC5.36□□□□□ -1.55
SHANK3Q9BYB0 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC5.36□□□□□ -1.55
SHANK3Q9BYB0 AL513477.2-201ENST00000607858 568 ntBASIC5.36□□□□□ -1.55
SHANK3Q9BYB0 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC5.36□□□□□ -1.55
SHANK3Q9BYB0 PDE1C-203ENST00000396184 8852 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SHANK3Q9BYB0 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SHANK3Q9BYB0 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC5.35□□□□□ -1.55
SHANK3Q9BYB0 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.35□□□□□ -1.55
SHANK3Q9BYB0 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SHANK3Q9BYB0 MIR1289-1-201ENST00000408836 144 ntBASIC5.35□□□□□ -1.55
SHANK3Q9BYB0 CTSL3P-202ENST00000412179 788 ntBASIC5.35□□□□□ -1.55
SHANK3Q9BYB0 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SHANK3Q9BYB0 AC008155.2-201ENST00000464337 397 ntBASIC5.35□□□□□ -1.55
SHANK3Q9BYB0 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC5.35□□□□□ -1.55
SHANK3Q9BYB0 NAT2-202ENST00000520116 716 ntTSL 3 BASIC5.35□□□□□ -1.55
SHANK3Q9BYB0 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC5.35□□□□□ -1.55
SHANK3Q9BYB0 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC5.35□□□□□ -1.55
SHANK3Q9BYB0 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC5.35□□□□□ -1.55
SHANK3Q9BYB0 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC5.35□□□□□ -1.55
SHANK3Q9BYB0 GTF2IP8-201ENST00000560687 584 ntBASIC5.35□□□□□ -1.55
SHANK3Q9BYB0 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC5.35□□□□□ -1.55
SHANK3Q9BYB0 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC5.35□□□□□ -1.55
SHANK3Q9BYB0 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC5.35□□□□□ -1.55
SHANK3Q9BYB0 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SHANK3Q9BYB0 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
SHANK3Q9BYB0 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SHANK3Q9BYB0 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SHANK3Q9BYB0 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC5.35□□□□□ -1.55
SHANK3Q9BYB0 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
SHANK3Q9BYB0 AC010266.2-201ENST00000564741 3255 ntBASIC5.35□□□□□ -1.55
SHANK3Q9BYB0 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.35□□□□□ -1.55
SHANK3Q9BYB0 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC5.34□□□□□ -1.55
SHANK3Q9BYB0 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
SHANK3Q9BYB0 SNORD66.1-201ENST00000391230 76 ntBASIC5.34□□□□□ -1.55
SHANK3Q9BYB0 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC5.34□□□□□ -1.55
SHANK3Q9BYB0 MAP1LC3BP1-201ENST00000417653 379 ntBASIC5.34□□□□□ -1.55
SHANK3Q9BYB0 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SHANK3Q9BYB0 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC5.34□□□□□ -1.55
SHANK3Q9BYB0 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC5.34□□□□□ -1.55
SHANK3Q9BYB0 RPS3AP6-201ENST00000484430 795 ntBASIC5.34□□□□□ -1.55
SHANK3Q9BYB0 HPRT1P2-201ENST00000505250 544 ntBASIC5.34□□□□□ -1.55
SHANK3Q9BYB0 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SHANK3Q9BYB0 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC5.34□□□□□ -1.55
SHANK3Q9BYB0 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC5.34□□□□□ -1.55
SHANK3Q9BYB0 AL354798.1-201ENST00000622505 329 ntBASIC5.34□□□□□ -1.55
SHANK3Q9BYB0 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC5.34□□□□□ -1.55
SHANK3Q9BYB0 AC055839.1-201ENST00000634467 498 ntBASIC5.34□□□□□ -1.55
SHANK3Q9BYB0 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SHANK3Q9BYB0 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
SHANK3Q9BYB0 MARK2P15-201ENST00000432204 2186 ntBASIC5.34□□□□□ -1.55
SHANK3Q9BYB0 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SHANK3Q9BYB0 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SHANK3Q9BYB0 AL390036.1-202ENST00000634635 2439 ntTSL 5 BASIC5.34□□□□□ -1.55
SHANK3Q9BYB0 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SHANK3Q9BYB0 AC021242.1-201ENST00000507315 2035 ntBASIC5.34□□□□□ -1.55
SHANK3Q9BYB0 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC5.34□□□□□ -1.56
SHANK3Q9BYB0 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
SHANK3Q9BYB0 RN7SKP186-201ENST00000365371 303 ntBASIC5.34□□□□□ -1.56
SHANK3Q9BYB0 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC5.34□□□□□ -1.56
SHANK3Q9BYB0 AL139247.1-201ENST00000422768 325 ntBASIC5.34□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 129.9 ms