Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 AL049830.4-201ENST00000555149 351 ntBASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 ATP5J2P6-201ENST00000565203 266 ntBASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 AC124283.4-201ENST00000581815 456 ntBASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 AC006116.7-201ENST00000590141 756 ntBASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 AL356218.2-201ENST00000605264 187 ntBASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 MIR8084-201ENST00000614105 89 ntBASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 AL121873.1-201ENST00000616013 524 ntBASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 AL121890.2-201ENST00000617644 465 ntBASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 AC095038.2-201ENST00000621464 1070 ntBASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 USP45-204ENST00000369233 2514 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 AL592148.3-201ENST00000608771 2646 ntBASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 AC139713.2-215ENST00000641428 5037 ntBASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 RNA5SP447-201ENST00000363749 119 ntBASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 BMS1P3-201ENST00000372011 932 ntBASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 AL136131.1-201ENST00000406079 803 ntBASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 RN7SKP267-201ENST00000410381 285 ntBASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 RNA5SP498-201ENST00000411342 120 ntBASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 ELOCP19-201ENST00000411919 318 ntBASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 AL645608.4-201ENST00000423619 154 ntBASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 GTF3AP5-201ENST00000442645 697 ntBASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 NDUFAF4P3-201ENST00000456468 525 ntBASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 CDH12P2-201ENST00000504393 298 ntBASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 AC121161.1-201ENST00000510606 652 ntBASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 RNU6-1004P-201ENST00000516584 111 ntBASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 RPL23AP53-201ENST00000521854 457 ntBASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 HAUS1P3-201ENST00000523909 662 ntBASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 AC136624.4-201ENST00000573044 370 ntBASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 AP005119.2-201ENST00000579735 1105 ntBASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 AC073091.2-201ENST00000603205 907 ntBASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 AC025175.1-201ENST00000606482 759 ntBASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 OR7A19P-201ENST00000608051 733 ntBASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 DDX18P5-201ENST00000534547 1306 ntBASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 AC006971.1-201ENST00000407916 4486 ntBASIC4.6□□□□□ -1.67
CCDC3Q9BQI4 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 SMG1P6-201ENST00000532337 2930 ntBASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 FAM3C2-201ENST00000312214 681 ntBASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 RN7SKP74-201ENST00000362849 309 ntBASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 AL591848.1-201ENST00000413092 322 ntBASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 XKRYP4-201ENST00000414395 483 ntBASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 AC004690.1-201ENST00000418216 328 ntBASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 CHIAP3-201ENST00000423668 1133 ntBASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 RPEP3-201ENST00000425462 676 ntBASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 HSFY7P-201ENST00000432672 318 ntBASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 HSFY8P-201ENST00000437934 318 ntBASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC4.59□□□□□ -1.67
CCDC3Q9BQI4 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC4.59□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms