Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 SPECC1L-207ENST00000541492 3525 ntTSL 2 BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 WDR95P-201ENST00000425638 1542 ntBASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 FKBP5-202ENST00000536438 3940 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 LINC01776-201ENST00000418344 2229 ntTSL 2 BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 PBLD-204ENST00000358769 2587 ntAPPRIS P1 TSL 5 BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 ZMYM6-202ENST00000357182 4330 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 IBTK-201ENST00000306270 6054 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 GNG5P1-201ENST00000255500 204 ntBASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 PSMA6-201ENST00000261479 1029 ntAPPRIS P2 TSL 1 (best) BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 HIST1H2BA-201ENST00000274764 516 ntAPPRIS P1 BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 OR9K1P-201ENST00000326513 941 ntBASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 RNU4-2-201ENST00000365668 141 ntBASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 AL929472.1-201ENST00000417484 429 ntBASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 AC234782.4-201ENST00000417646 1048 ntBASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 DUTP6-201ENST00000425573 462 ntBASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 AC115283.1-201ENST00000427353 400 ntBASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 RPS27AP6-201ENST00000427962 448 ntBASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 AC239367.3-201ENST00000428996 814 ntBASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 AC108479.1-201ENST00000431142 427 ntBASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 SETP5-201ENST00000437270 562 ntBASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 DNAJC19P5-201ENST00000443295 316 ntBASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 Z83838.1-202ENST00000456225 839 ntBASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 RPL5P30-201ENST00000465511 891 ntBASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 AC108693.1-201ENST00000496068 432 ntBASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 PCBP2P3-201ENST00000509726 843 ntBASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 TTC39CP1-201ENST00000512513 755 ntBASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 SNORA48.10-201ENST00000516965 160 ntBASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 OR5B10P-201ENST00000532869 642 ntBASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 NR2F2-AS1-209ENST00000560800 549 ntTSL 4 BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 AC007496.2-201ENST00000564801 547 ntTSL 4 BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 AC002310.3-201ENST00000569728 723 ntBASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 AC087575.1-201ENST00000585087 229 ntBASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 AC245389.1-201ENST00000605141 529 ntBASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 AC018889.1-201ENST00000605372 397 ntBASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 AC015982.1-201ENST00000608113 465 ntBASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 AC096861.1-201ENST00000616652 240 ntBASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 AC007485.1-201ENST00000616755 206 ntBASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 AL450990.1-201ENST00000632868 582 ntTSL 4 BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 AC132825.6-201ENST00000638861 357 ntBASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 TRIM5-203ENST00000396847 3170 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 AL160408.3-201ENST00000442382 3564 ntTSL 2 BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 SAR1A-206ENST00000431664 2810 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 DDX58-202ENST00000379883 4353 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 GABRA1-211ENST00000635880 1739 ntAPPRIS P1 TSL 5 BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 ADH1B-201ENST00000305046 4072 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 CHST12-201ENST00000258711 15979 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 OSGEPL1-207ENST00000522700 1779 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 FAM161A-202ENST00000404929 3762 ntAPPRIS ALT2 TSL 1 (best) BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 SCRN3-201ENST00000272732 3037 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 NAALAD2-201ENST00000321955 3035 ntTSL 2 BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 LRRC37B-203ENST00000394713 3025 ntAPPRIS P3 TSL 1 (best) BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 AC026316.3-201ENST00000497988 3097 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 PHACTR2-201ENST00000305766 1851 ntAPPRIS P3 TSL 2 BASIC6.92□□□□□ -1.3
NPAS3Q8IXF0 GRPR-201ENST00000380289 1929 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
NPAS3Q8IXF0 RNF14-204ENST00000394519 4173 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
NPAS3Q8IXF0 KIF14-202ENST00000614960 6838 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
NPAS3Q8IXF0 DMTF1-213ENST00000432937 2411 ntTSL 2 BASIC6.91□□□□□ -1.3
NPAS3Q8IXF0 SMG1P5-202ENST00000529428 4219 ntBASIC6.91□□□□□ -1.3
NPAS3Q8IXF0 SMG1P2-201ENST00000566127 4221 ntBASIC6.91□□□□□ -1.3
NPAS3Q8IXF0 TMEM132B-206ENST00000613307 9659 ntAPPRIS ALT2 TSL 1 (best) BASIC6.91□□□□□ -1.3
NPAS3Q8IXF0 TRIM6-202ENST00000380097 3403 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
NPAS3Q8IXF0 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
NPAS3Q8IXF0 IPCEF1-201ENST00000265198 6689 ntAPPRIS P3 TSL 1 (best) BASIC6.91□□□□□ -1.3
NPAS3Q8IXF0 VIRMA-202ENST00000421249 3924 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
NPAS3Q8IXF0 AC020658.2-201ENST00000559030 4020 ntBASIC6.91□□□□□ -1.3
NPAS3Q8IXF0 ABCA9-201ENST00000340001 6514 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
NPAS3Q8IXF0 OR2T33-202ENST00000641220 4118 ntAPPRIS P1 BASIC6.91□□□□□ -1.3
NPAS3Q8IXF0 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC6.91□□□□□ -1.3
NPAS3Q8IXF0 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
NPAS3Q8IXF0 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
NPAS3Q8IXF0 TEX11-202ENST00000374320 2224 ntTSL 2 BASIC6.91□□□□□ -1.3
NPAS3Q8IXF0 DNA2-203ENST00000399180 3207 ntTSL 2 BASIC6.91□□□□□ -1.3
NPAS3Q8IXF0 KCNMB2-201ENST00000358316 2271 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
NPAS3Q8IXF0 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC6.91□□□□□ -1.3
NPAS3Q8IXF0 HMGB1P5-201ENST00000255320 642 ntBASIC6.91□□□□□ -1.3
NPAS3Q8IXF0 Y_RNA.153-201ENST00000363615 91 ntBASIC6.91□□□□□ -1.3
NPAS3Q8IXF0 RNU6-746P-201ENST00000384112 109 ntBASIC6.91□□□□□ -1.3
NPAS3Q8IXF0 CD3D-202ENST00000392884 476 ntTSL 2 BASIC6.91□□□□□ -1.3
NPAS3Q8IXF0 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC6.91□□□□□ -1.3
NPAS3Q8IXF0 TPMTP2-201ENST00000414372 726 ntBASIC6.91□□□□□ -1.3
NPAS3Q8IXF0 Z93019.1-201ENST00000416450 973 ntBASIC6.91□□□□□ -1.3
NPAS3Q8IXF0 PIGPP3-201ENST00000425307 415 ntBASIC6.91□□□□□ -1.3
NPAS3Q8IXF0 AL157400.1-201ENST00000428166 368 ntTSL 5 BASIC6.91□□□□□ -1.3
NPAS3Q8IXF0 SKP1P1-201ENST00000438081 489 ntBASIC6.91□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 111.7 ms