Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ZNRD1ASP-221ENST00000637794 1074 ntBASIC6.38□□□□□ -1.39
LIG3P49916 DCAF13P1-201ENST00000495256 1330 ntBASIC6.38□□□□□ -1.39
LIG3P49916 VPS35P1-201ENST00000563400 1518 ntBASIC6.38□□□□□ -1.39
LIG3P49916 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
LIG3P49916 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
LIG3P49916 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC6.38□□□□□ -1.39
LIG3P49916 LINC00561-201ENST00000565815 2738 ntBASIC6.38□□□□□ -1.39
LIG3P49916 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
LIG3P49916 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
LIG3P49916 OR9K1P-202ENST00000641111 3217 ntBASIC6.38□□□□□ -1.39
LIG3P49916 MCM8-201ENST00000265187 3442 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
LIG3P49916 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC6.37□□□□□ -1.39
LIG3P49916 AC004076.2-201ENST00000620532 3323 ntBASIC6.37□□□□□ -1.39
LIG3P49916 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC6.37□□□□□ -1.39
LIG3P49916 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
LIG3P49916 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
LIG3P49916 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.37□□□□□ -1.39
LIG3P49916 RLIMP2-201ENST00000427891 1563 ntBASIC6.37□□□□□ -1.39
LIG3P49916 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
LIG3P49916 RNA5SP350-201ENST00000363298 111 ntBASIC6.37□□□□□ -1.39
LIG3P49916 RNU6-694P-201ENST00000364071 147 ntBASIC6.37□□□□□ -1.39
LIG3P49916 RNU4-12P-201ENST00000365233 139 ntBASIC6.37□□□□□ -1.39
LIG3P49916 RNU6-114P-201ENST00000384704 105 ntBASIC6.37□□□□□ -1.39
LIG3P49916 MIR506-201ENST00000384998 124 ntBASIC6.37□□□□□ -1.39
LIG3P49916 MIR137-201ENST00000385223 102 ntBASIC6.37□□□□□ -1.39
LIG3P49916 SNORD115-47-201ENST00000391226 86 ntBASIC6.37□□□□□ -1.39
LIG3P49916 HMGB3P7-201ENST00000400214 611 ntBASIC6.37□□□□□ -1.39
LIG3P49916 RPS24P12-201ENST00000402084 394 ntBASIC6.37□□□□□ -1.39
LIG3P49916 RNU2-6P-201ENST00000411404 190 ntBASIC6.37□□□□□ -1.39
LIG3P49916 AC015977.1-201ENST00000418887 292 ntBASIC6.37□□□□□ -1.39
LIG3P49916 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC6.37□□□□□ -1.39
LIG3P49916 AC108479.1-201ENST00000431142 427 ntBASIC6.37□□□□□ -1.39
LIG3P49916 AC000111.3-201ENST00000433478 193 ntBASIC6.37□□□□□ -1.39
LIG3P49916 USP24P1-201ENST00000433802 779 ntBASIC6.37□□□□□ -1.39
LIG3P49916 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC6.37□□□□□ -1.39
LIG3P49916 AL022238.1-201ENST00000442557 355 ntBASIC6.37□□□□□ -1.39
LIG3P49916 BMS1P10-201ENST00000443754 1120 ntBASIC6.37□□□□□ -1.39
LIG3P49916 RPL7P36-201ENST00000444633 681 ntBASIC6.37□□□□□ -1.39
LIG3P49916 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC6.37□□□□□ -1.39
LIG3P49916 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
LIG3P49916 VN1R38P-201ENST00000450265 887 ntBASIC6.37□□□□□ -1.39
LIG3P49916 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC6.37□□□□□ -1.39
LIG3P49916 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC6.37□□□□□ -1.39
LIG3P49916 RPL23AP12-201ENST00000467573 473 ntBASIC6.37□□□□□ -1.39
LIG3P49916 AL121769.1-201ENST00000469473 401 ntBASIC6.37□□□□□ -1.39
LIG3P49916 RN7SL643P-201ENST00000471845 291 ntBASIC6.37□□□□□ -1.39
LIG3P49916 RPL7P6-201ENST00000480903 738 ntBASIC6.37□□□□□ -1.39
LIG3P49916 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC6.37□□□□□ -1.39
LIG3P49916 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC6.37□□□□□ -1.39
LIG3P49916 AC018797.1-201ENST00000510791 255 ntBASIC6.37□□□□□ -1.39
LIG3P49916 AC106800.3-201ENST00000511389 308 ntBASIC6.37□□□□□ -1.39
LIG3P49916 ZNF519P4-201ENST00000514008 125 ntBASIC6.37□□□□□ -1.39
LIG3P49916 IGKV1D-22-201ENST00000518953 324 ntBASIC6.37□□□□□ -1.39
LIG3P49916 IGHV4-55-201ENST00000520889 368 ntBASIC6.37□□□□□ -1.39
LIG3P49916 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC6.37□□□□□ -1.39
LIG3P49916 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC6.37□□□□□ -1.39
LIG3P49916 AL121579.1-201ENST00000555129 305 ntBASIC6.37□□□□□ -1.39
LIG3P49916 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC6.37□□□□□ -1.39
LIG3P49916 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC6.37□□□□□ -1.39
LIG3P49916 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC6.37□□□□□ -1.39
LIG3P49916 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC6.37□□□□□ -1.39
LIG3P49916 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC6.37□□□□□ -1.39
LIG3P49916 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC6.37□□□□□ -1.39
LIG3P49916 VN1R79P-201ENST00000593540 513 ntBASIC6.37□□□□□ -1.39
LIG3P49916 VN1R84P-201ENST00000593697 235 ntBASIC6.37□□□□□ -1.39
LIG3P49916 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC6.37□□□□□ -1.39
LIG3P49916 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC6.37□□□□□ -1.39
LIG3P49916 SMIM12P1-201ENST00000603004 274 ntBASIC6.37□□□□□ -1.39
LIG3P49916 AC091488.1-201ENST00000604239 660 ntBASIC6.37□□□□□ -1.39
LIG3P49916 RPSAP75-201ENST00000605848 301 ntBASIC6.37□□□□□ -1.39
LIG3P49916 SNORA74.4-201ENST00000607595 199 ntBASIC6.37□□□□□ -1.39
LIG3P49916 AC017083.3-201ENST00000609955 700 ntBASIC6.37□□□□□ -1.39
LIG3P49916 AC131902.3-201ENST00000611767 581 ntBASIC6.37□□□□□ -1.39
LIG3P49916 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
LIG3P49916 Metazoa_SRP.38-201ENST00000615981 254 ntBASIC6.37□□□□□ -1.39
LIG3P49916 AC231657.1-201ENST00000624313 397 ntBASIC6.37□□□□□ -1.39
LIG3P49916 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC6.37□□□□□ -1.39
LIG3P49916 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC6.37□□□□□ -1.39
LIG3P49916 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC6.37□□□□□ -1.39
LIG3P49916 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
LIG3P49916 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
LIG3P49916 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
LIG3P49916 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC6.36□□□□□ -1.39
LIG3P49916 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC6.36□□□□□ -1.39
LIG3P49916 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
LIG3P49916 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
LIG3P49916 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
LIG3P49916 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
LIG3P49916 BCORP1-203ENST00000513194 5093 ntBASIC6.36□□□□□ -1.39
LIG3P49916 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC6.36□□□□□ -1.39
LIG3P49916 AL512646.1-201ENST00000269395 1077 ntBASIC6.36□□□□□ -1.39
LIG3P49916 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
LIG3P49916 Y_RNA.303-201ENST00000364998 94 ntBASIC6.36□□□□□ -1.39
LIG3P49916 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
LIG3P49916 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC6.36□□□□□ -1.39
LIG3P49916 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
LIG3P49916 RNU6-297P-201ENST00000384636 107 ntBASIC6.36□□□□□ -1.39
LIG3P49916 RPS3AP23-201ENST00000401762 784 ntBASIC6.36□□□□□ -1.39
LIG3P49916 AGR3-202ENST00000402239 563 ntTSL 2 BASIC6.36□□□□□ -1.39
LIG3P49916 RNU6-248P-201ENST00000410720 107 ntBASIC6.36□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms