Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RN7SL751P-201ENST00000473281 284 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 AL163973.1-201ENST00000484753 577 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 AC106872.2-201ENST00000494303 480 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 RPL39P5-202ENST00000512505 151 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 Y_RNA.665-201ENST00000516177 98 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 RNU6-182P-201ENST00000516970 105 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC6.13□□□□□ -1.43
COL8A1P27658 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC6.13□□□□□ -1.43
COL8A1P27658 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC6.13□□□□□ -1.43
COL8A1P27658 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC6.13□□□□□ -1.43
COL8A1P27658 MIR3167-201ENST00000579623 85 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 MIR3614-201ENST00000581261 86 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC6.13□□□□□ -1.43
COL8A1P27658 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL8A1P27658 AC097381.3-201ENST00000608962 462 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 AC109309.2-201ENST00000612597 332 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC6.13□□□□□ -1.43
COL8A1P27658 AC007546.1-201ENST00000619452 559 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 LINC01141-204ENST00000635564 1008 ntTSL 5 BASIC6.13□□□□□ -1.43
COL8A1P27658 AC132825.6-201ENST00000638861 357 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 CNTRL-207ENST00000373855 7660 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
COL8A1P27658 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL8A1P27658 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL8A1P27658 HUS1-201ENST00000258774 2935 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL8A1P27658 AL359922.2-201ENST00000581788 3017 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 PZP-201ENST00000261336 4610 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL8A1P27658 TLR10-202ENST00000361424 3484 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL8A1P27658 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC6.13□□□□□ -1.43
COL8A1P27658 SLC4A4-204ENST00000425175 7596 ntTSL 5 BASIC6.13□□□□□ -1.43
COL8A1P27658 NRCAM-203ENST00000379024 5782 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL8A1P27658 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC6.13□□□□□ -1.43
COL8A1P27658 PNPT1P2-201ENST00000456768 2050 ntBASIC6.13□□□□□ -1.43
COL8A1P27658 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
COL8A1P27658 ANKRD36BP2-207ENST00000622311 5398 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL8A1P27658 EIF2S3-201ENST00000253039 2858 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL8A1P27658 OR8H1-203ENST00000641600 2927 ntAPPRIS P2 BASIC6.12□□□□□ -1.43
COL8A1P27658 ZFP37-201ENST00000374227 6266 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL8A1P27658 TOPORS-202ENST00000379858 3621 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL8A1P27658 PEX19-201ENST00000368072 3661 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL8A1P27658 GUCY2C-201ENST00000261170 3844 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL8A1P27658 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC6.12□□□□□ -1.43
COL8A1P27658 PLCH1-203ENST00000447496 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL8A1P27658 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL8A1P27658 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL8A1P27658 TRIM42-201ENST00000286349 2539 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL8A1P27658 MYOCD-201ENST00000343344 2817 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL8A1P27658 RAPGEF5-201ENST00000344041 6621 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
COL8A1P27658 RGS7-201ENST00000348120 1980 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL8A1P27658 MPPED2-201ENST00000358117 2405 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL8A1P27658 RNU6-492P-201ENST00000363035 104 ntBASIC6.12□□□□□ -1.43
COL8A1P27658 RNU6-774P-201ENST00000363238 107 ntBASIC6.12□□□□□ -1.43
COL8A1P27658 RNA5SP512-201ENST00000364550 120 ntBASIC6.12□□□□□ -1.43
COL8A1P27658 RN7SKP69-201ENST00000365390 305 ntBASIC6.12□□□□□ -1.43
COL8A1P27658 AC073842.1-201ENST00000376482 342 ntTSL 5 BASIC6.12□□□□□ -1.43
COL8A1P27658 Y_RNA.396-201ENST00000383949 103 ntBASIC6.12□□□□□ -1.43
COL8A1P27658 ADAL-201ENST00000389651 1559 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL8A1P27658 AL360271.1-201ENST00000395679 510 ntBASIC6.12□□□□□ -1.43
COL8A1P27658 RPS20P2-201ENST00000402520 389 ntBASIC6.12□□□□□ -1.43
COL8A1P27658 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC6.12□□□□□ -1.43
COL8A1P27658 MIR320C1-201ENST00000408566 88 ntBASIC6.12□□□□□ -1.43
COL8A1P27658 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL8A1P27658 AL138831.1-201ENST00000415144 209 ntTSL 3 BASIC6.12□□□□□ -1.43
COL8A1P27658 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC6.12□□□□□ -1.43
COL8A1P27658 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
COL8A1P27658 AL593856.1-201ENST00000419949 805 ntBASIC6.12□□□□□ -1.43
COL8A1P27658 AC243428.1-201ENST00000421099 264 ntBASIC6.12□□□□□ -1.43
COL8A1P27658 KIAA0232-202ENST00000425103 7771 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL8A1P27658 HDAC9-214ENST00000441542 3210 ntAPPRIS P4 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL8A1P27658 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC6.12□□□□□ -1.43
COL8A1P27658 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC6.12□□□□□ -1.43
COL8A1P27658 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC6.12□□□□□ -1.43
COL8A1P27658 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC6.12□□□□□ -1.43
COL8A1P27658 AC016930.1-201ENST00000468766 2205 ntBASIC6.12□□□□□ -1.43
COL8A1P27658 AC092451.1-201ENST00000480211 153 ntBASIC6.12□□□□□ -1.43
COL8A1P27658 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL8A1P27658 OR4D12P-201ENST00000509361 911 ntBASIC6.12□□□□□ -1.43
COL8A1P27658 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC6.12□□□□□ -1.43
COL8A1P27658 Y_RNA.680-201ENST00000516441 93 ntBASIC6.12□□□□□ -1.43
COL8A1P27658 Y_RNA.721-201ENST00000517207 102 ntBASIC6.12□□□□□ -1.43
COL8A1P27658 ATP6V0E1-202ENST00000517669 502 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL8A1P27658 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC6.12□□□□□ -1.43
COL8A1P27658 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
COL8A1P27658 OR52K3P-201ENST00000531655 943 ntBASIC6.12□□□□□ -1.43
COL8A1P27658 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC6.12□□□□□ -1.43
COL8A1P27658 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC6.12□□□□□ -1.43
COL8A1P27658 MEPE-208ENST00000540395 2135 ntAPPRIS ALT2 TSL 4 BASIC6.12□□□□□ -1.43
COL8A1P27658 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC6.12□□□□□ -1.43
COL8A1P27658 ARL1-211ENST00000551828 776 ntTSL 5 BASIC6.12□□□□□ -1.43
COL8A1P27658 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC6.12□□□□□ -1.43
COL8A1P27658 AC110716.2-201ENST00000563865 3945 ntBASIC6.12□□□□□ -1.43
COL8A1P27658 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC6.12□□□□□ -1.43
COL8A1P27658 CYLD-210ENST00000566206 3104 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL8A1P27658 AC102941.1-201ENST00000567616 1537 ntBASIC6.12□□□□□ -1.43
COL8A1P27658 AC002310.3-201ENST00000569728 723 ntBASIC6.12□□□□□ -1.43
COL8A1P27658 RN7SL366P-201ENST00000577957 292 ntBASIC6.12□□□□□ -1.43
COL8A1P27658 AC069061.3-201ENST00000582254 823 ntBASIC6.12□□□□□ -1.43
COL8A1P27658 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC6.12□□□□□ -1.43
COL8A1P27658 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC6.12□□□□□ -1.43
COL8A1P27658 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL8A1P27658 AC053481.5-201ENST00000602932 397 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms