Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 METTL8-218ENST00000638989 876 ntTSL 5 BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 METTL8-219ENST00000640734 726 ntTSL 2 BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 LINC01355-201ENST00000566551 5444 ntBASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 AL137100.1-201ENST00000556703 1620 ntBASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 API5-210ENST00000534600 1760 ntTSL 5 BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC3Q9BQI4 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 MIR129-1-201ENST00000384972 72 ntBASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 U3.22-201ENST00000391120 215 ntBASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 AL035405.1-201ENST00000400795 710 ntBASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 AL049693.1-201ENST00000402760 611 ntBASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 RN7SKP247-201ENST00000411094 308 ntBASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 LINC00993-201ENST00000420453 540 ntBASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 PTP4A1P3-201ENST00000433661 420 ntBASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 RPS17P8-201ENST00000434525 335 ntBASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 TRIM60P9Y-201ENST00000438459 816 ntBASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 AL158053.1-201ENST00000441503 453 ntBASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 TRIM60P11Y-201ENST00000445313 801 ntBASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 SETP6-201ENST00000479329 568 ntBASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 AC092902.1-201ENST00000486999 259 ntBASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 AC013356.1-201ENST00000489027 564 ntBASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 AC023424.1-201ENST00000496058 459 ntBASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 AC025459.1-201ENST00000504072 156 ntBASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 RNU6-709P-201ENST00000517257 104 ntBASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 UBTFL9-201ENST00000534504 1148 ntBASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 SS18L2P2-201ENST00000583960 235 ntBASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 RPL12P25-202ENST00000598100 674 ntBASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 MTATP6P2-201ENST00000603319 678 ntBASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 AC005034.4-201ENST00000603612 899 ntBASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 AC006338.2-201ENST00000616864 791 ntBASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 AP001005.3-201ENST00000622049 129 ntBASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 AC010872.1-201ENST00000624225 675 ntBASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 AC016717.3-201ENST00000624730 554 ntBASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 AC119674.1-212ENST00000641155 993 ntBASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 AC108751.5-201ENST00000492880 1336 ntBASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 AL136520.1-201ENST00000600311 1322 ntBASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 MTND5P11-201ENST00000511037 1812 ntBASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 TLK1P1-201ENST00000456760 2440 ntBASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
CCDC3Q9BQI4 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 AC093775.1-201ENST00000624154 1868 ntBASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 SNORA63.3-201ENST00000362682 132 ntBASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 RNU4-44P-201ENST00000363050 141 ntBASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 RNU1-82P-201ENST00000390851 165 ntBASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 RNU6-1176P-201ENST00000390955 107 ntBASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 RNA5SP397-201ENST00000391323 118 ntBASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 ATP5F1P6-201ENST00000402768 767 ntBASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 AL158050.1-201ENST00000416077 457 ntBASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 RPL12P28-201ENST00000430852 489 ntBASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 AL451139.1-201ENST00000434718 346 ntBASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 AC073143.1-201ENST00000436316 395 ntBASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 RN7SL558P-201ENST00000497468 299 ntBASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 LINC01603-201ENST00000517343 1134 ntTSL 2 BASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 AP003102.1-201ENST00000525638 661 ntBASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 MTND5P21-201ENST00000531961 522 ntBASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC4.61□□□□□ -1.67
CCDC3Q9BQI4 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 118.5 ms