Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 RN7SL808P-201ENST00000496066 299 ntBASIC4.63□□□□□ -1.67
VPS39Q96JC1 AC083829.1-201ENST00000503756 657 ntBASIC4.63□□□□□ -1.67
VPS39Q96JC1 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC4.63□□□□□ -1.67
VPS39Q96JC1 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.63□□□□□ -1.67
VPS39Q96JC1 AC110775.1-201ENST00000513721 462 ntBASIC4.63□□□□□ -1.67
VPS39Q96JC1 RNA5SP446-201ENST00000515955 82 ntBASIC4.63□□□□□ -1.67
VPS39Q96JC1 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC4.63□□□□□ -1.67
VPS39Q96JC1 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
VPS39Q96JC1 AC021006.3-201ENST00000530771 192 ntBASIC4.63□□□□□ -1.67
VPS39Q96JC1 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC4.63□□□□□ -1.67
VPS39Q96JC1 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC4.63□□□□□ -1.67
VPS39Q96JC1 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC4.63□□□□□ -1.67
VPS39Q96JC1 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC4.63□□□□□ -1.67
VPS39Q96JC1 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC4.63□□□□□ -1.67
VPS39Q96JC1 AC105129.1-201ENST00000560250 297 ntBASIC4.63□□□□□ -1.67
VPS39Q96JC1 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC4.63□□□□□ -1.67
VPS39Q96JC1 AC016180.1-201ENST00000567945 403 ntBASIC4.63□□□□□ -1.67
VPS39Q96JC1 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC4.63□□□□□ -1.67
VPS39Q96JC1 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC4.63□□□□□ -1.67
VPS39Q96JC1 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
VPS39Q96JC1 AL445222.1-201ENST00000607259 628 ntBASIC4.63□□□□□ -1.67
VPS39Q96JC1 uc_338.18-201ENST00000615451 175 ntBASIC4.63□□□□□ -1.67
VPS39Q96JC1 AL035461.2-201ENST00000619201 524 ntBASIC4.63□□□□□ -1.67
VPS39Q96JC1 AC009452.1-201ENST00000640823 606 ntBASIC4.63□□□□□ -1.67
VPS39Q96JC1 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
VPS39Q96JC1 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
VPS39Q96JC1 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
VPS39Q96JC1 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
VPS39Q96JC1 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.63□□□□□ -1.67
VPS39Q96JC1 SAGE2P-201ENST00000420011 2126 ntBASIC4.63□□□□□ -1.67
VPS39Q96JC1 AC135352.1-201ENST00000506173 1418 ntBASIC4.63□□□□□ -1.67
VPS39Q96JC1 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.62□□□□□ -1.67
VPS39Q96JC1 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
VPS39Q96JC1 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.62□□□□□ -1.67
VPS39Q96JC1 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.62□□□□□ -1.67
VPS39Q96JC1 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
VPS39Q96JC1 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
VPS39Q96JC1 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC4.62□□□□□ -1.67
VPS39Q96JC1 MIR708-201ENST00000390708 88 ntBASIC4.62□□□□□ -1.67
VPS39Q96JC1 RSU1P3-201ENST00000412878 835 ntBASIC4.62□□□□□ -1.67
VPS39Q96JC1 AC009237.10-201ENST00000414112 510 ntBASIC4.62□□□□□ -1.67
VPS39Q96JC1 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS39Q96JC1 AC004448.2-201ENST00000422360 586 ntBASIC4.62□□□□□ -1.67
VPS39Q96JC1 RPL21P91-201ENST00000429231 479 ntBASIC4.62□□□□□ -1.67
VPS39Q96JC1 MED6P1-201ENST00000439659 713 ntBASIC4.62□□□□□ -1.67
VPS39Q96JC1 RPL34P26-201ENST00000445636 354 ntBASIC4.62□□□□□ -1.67
VPS39Q96JC1 AC108463.1-201ENST00000450258 347 ntBASIC4.62□□□□□ -1.67
VPS39Q96JC1 RN7SL329P-201ENST00000467740 299 ntBASIC4.62□□□□□ -1.67
VPS39Q96JC1 RN7SL41P-201ENST00000476144 297 ntBASIC4.62□□□□□ -1.67
VPS39Q96JC1 RN7SL817P-201ENST00000480777 288 ntBASIC4.62□□□□□ -1.67
VPS39Q96JC1 SUMO1P1-201ENST00000497904 306 ntBASIC4.62□□□□□ -1.67
VPS39Q96JC1 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS39Q96JC1 AC010285.3-201ENST00000511668 676 ntBASIC4.62□□□□□ -1.67
VPS39Q96JC1 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC4.62□□□□□ -1.67
VPS39Q96JC1 TBCA-203ENST00000517679 545 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS39Q96JC1 OR5AZ1P-201ENST00000527448 943 ntBASIC4.62□□□□□ -1.67
VPS39Q96JC1 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS39Q96JC1 BGLT3-201ENST00000564523 994 ntBASIC4.62□□□□□ -1.67
VPS39Q96JC1 AC027455.1-201ENST00000574104 594 ntBASIC4.62□□□□□ -1.67
VPS39Q96JC1 MIR4646-201ENST00000580775 63 ntBASIC4.62□□□□□ -1.67
VPS39Q96JC1 AC091178.1-203ENST00000584586 279 ntBASIC4.62□□□□□ -1.67
VPS39Q96JC1 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.62□□□□□ -1.67
VPS39Q96JC1 AL353600.1-201ENST00000608148 251 ntBASIC4.62□□□□□ -1.67
VPS39Q96JC1 MIR6719-201ENST00000622428 87 ntBASIC4.62□□□□□ -1.67
VPS39Q96JC1 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC4.62□□□□□ -1.67
VPS39Q96JC1 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
VPS39Q96JC1 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC4.62□□□□□ -1.67
VPS39Q96JC1 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
VPS39Q96JC1 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
VPS39Q96JC1 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
VPS39Q96JC1 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
VPS39Q96JC1 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
VPS39Q96JC1 AC007529.1-201ENST00000418574 2178 ntBASIC4.61□□□□□ -1.67
VPS39Q96JC1 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
VPS39Q96JC1 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
VPS39Q96JC1 ELOC-201ENST00000284811 683 ntAPPRIS P1 TSL 3 BASIC4.61□□□□□ -1.67
VPS39Q96JC1 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
VPS39Q96JC1 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC4.61□□□□□ -1.67
VPS39Q96JC1 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
VPS39Q96JC1 RNU6-452P-201ENST00000384406 107 ntBASIC4.61□□□□□ -1.67
VPS39Q96JC1 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC4.61□□□□□ -1.67
VPS39Q96JC1 AL645733.1-201ENST00000402250 217 ntBASIC4.61□□□□□ -1.67
VPS39Q96JC1 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
VPS39Q96JC1 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
VPS39Q96JC1 NRBF2P3-201ENST00000432731 865 ntBASIC4.61□□□□□ -1.67
VPS39Q96JC1 TRAPPC2P9-201ENST00000434556 343 ntBASIC4.61□□□□□ -1.67
VPS39Q96JC1 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC4.61□□□□□ -1.67
VPS39Q96JC1 PTMAP6-201ENST00000439110 327 ntBASIC4.61□□□□□ -1.67
VPS39Q96JC1 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC4.61□□□□□ -1.67
VPS39Q96JC1 RSL24D1P2-201ENST00000445584 366 ntBASIC4.61□□□□□ -1.67
VPS39Q96JC1 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC4.61□□□□□ -1.67
VPS39Q96JC1 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC4.61□□□□□ -1.67
VPS39Q96JC1 RPL36AP41-201ENST00000493820 306 ntBASIC4.61□□□□□ -1.67
VPS39Q96JC1 PRELID3BP7-201ENST00000503606 469 ntBASIC4.61□□□□□ -1.67
VPS39Q96JC1 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC4.61□□□□□ -1.67
VPS39Q96JC1 AC021146.3-201ENST00000511911 260 ntBASIC4.61□□□□□ -1.67
VPS39Q96JC1 SNORA48.9-201ENST00000516419 162 ntBASIC4.61□□□□□ -1.67
VPS39Q96JC1 AP000676.2-201ENST00000529711 301 ntBASIC4.61□□□□□ -1.67
VPS39Q96JC1 AP001880.2-201ENST00000538233 448 ntBASIC4.61□□□□□ -1.67
VPS39Q96JC1 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 115.2 ms