Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
USH1CQ9Y6N9 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
USH1CQ9Y6N9 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
USH1CQ9Y6N9 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USH1CQ9Y6N9 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USH1CQ9Y6N9 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.32■□□□□ 0.68
USH1CQ9Y6N9 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
USH1CQ9Y6N9 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USH1CQ9Y6N9 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USH1CQ9Y6N9 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.32■□□□□ 0.68
USH1CQ9Y6N9 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.32■□□□□ 0.68
USH1CQ9Y6N9 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.32■□□□□ 0.68
USH1CQ9Y6N9 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.32■□□□□ 0.68
USH1CQ9Y6N9 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.32■□□□□ 0.68
USH1CQ9Y6N9 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
USH1CQ9Y6N9 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USH1CQ9Y6N9 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
USH1CQ9Y6N9 KRT16P6-202ENST00000425692 1426 ntBASIC19.32■□□□□ 0.68
USH1CQ9Y6N9 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USH1CQ9Y6N9 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
USH1CQ9Y6N9 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USH1CQ9Y6N9 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
USH1CQ9Y6N9 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USH1CQ9Y6N9 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
USH1CQ9Y6N9 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USH1CQ9Y6N9 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
USH1CQ9Y6N9 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
USH1CQ9Y6N9 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USH1CQ9Y6N9 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
USH1CQ9Y6N9 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USH1CQ9Y6N9 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USH1CQ9Y6N9 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
USH1CQ9Y6N9 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
USH1CQ9Y6N9 CYP21A1P-202ENST00000354927 1481 ntBASIC19.31■□□□□ 0.68
USH1CQ9Y6N9 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USH1CQ9Y6N9 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.31■□□□□ 0.68
USH1CQ9Y6N9 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USH1CQ9Y6N9 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC19.31■□□□□ 0.68
USH1CQ9Y6N9 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.31■□□□□ 0.68
USH1CQ9Y6N9 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC19.31■□□□□ 0.68
USH1CQ9Y6N9 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USH1CQ9Y6N9 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
USH1CQ9Y6N9 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
USH1CQ9Y6N9 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
USH1CQ9Y6N9 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USH1CQ9Y6N9 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
USH1CQ9Y6N9 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USH1CQ9Y6N9 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USH1CQ9Y6N9 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USH1CQ9Y6N9 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC19.31■□□□□ 0.68
USH1CQ9Y6N9 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.31■□□□□ 0.68
USH1CQ9Y6N9 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USH1CQ9Y6N9 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
USH1CQ9Y6N9 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.3■□□□□ 0.68
USH1CQ9Y6N9 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
USH1CQ9Y6N9 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USH1CQ9Y6N9 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
USH1CQ9Y6N9 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USH1CQ9Y6N9 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC19.3■□□□□ 0.68
USH1CQ9Y6N9 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
USH1CQ9Y6N9 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC19.3■□□□□ 0.68
USH1CQ9Y6N9 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USH1CQ9Y6N9 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
USH1CQ9Y6N9 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
USH1CQ9Y6N9 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USH1CQ9Y6N9 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USH1CQ9Y6N9 TERF1P2-201ENST00000583350 1212 ntBASIC19.3■□□□□ 0.68
USH1CQ9Y6N9 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.3■□□□□ 0.68
USH1CQ9Y6N9 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USH1CQ9Y6N9 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
USH1CQ9Y6N9 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC19.3■□□□□ 0.68
USH1CQ9Y6N9 WIZP1-201ENST00000531444 2299 ntBASIC19.3■□□□□ 0.68
USH1CQ9Y6N9 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
USH1CQ9Y6N9 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USH1CQ9Y6N9 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
USH1CQ9Y6N9 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USH1CQ9Y6N9 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
USH1CQ9Y6N9 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.29■□□□□ 0.68
USH1CQ9Y6N9 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC19.29■□□□□ 0.68
USH1CQ9Y6N9 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
USH1CQ9Y6N9 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USH1CQ9Y6N9 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
USH1CQ9Y6N9 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
USH1CQ9Y6N9 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
USH1CQ9Y6N9 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
USH1CQ9Y6N9 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USH1CQ9Y6N9 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
USH1CQ9Y6N9 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.29■□□□□ 0.68
USH1CQ9Y6N9 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USH1CQ9Y6N9 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
USH1CQ9Y6N9 NALT1-201ENST00000429224 738 ntTSL 5 BASIC19.29■□□□□ 0.68
USH1CQ9Y6N9 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.29■□□□□ 0.68
USH1CQ9Y6N9 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC19.29■□□□□ 0.68
USH1CQ9Y6N9 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USH1CQ9Y6N9 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
USH1CQ9Y6N9 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USH1CQ9Y6N9 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USH1CQ9Y6N9 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
USH1CQ9Y6N9 NOC2LP2-201ENST00000407594 1944 ntBASIC19.29■□□□□ 0.68
USH1CQ9Y6N9 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms